Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0512.Seq
(489 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) 75 2e-14
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ... 74 5e-14
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ... 74 5e-14
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) 73 1e-13
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi... 72 2e-13
At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containi... 32 0.18
At5g40530.2 68418.m04918 expressed protein contains Pfam profile... 29 2.2
At5g40530.1 68418.m04919 expressed protein contains Pfam profile... 29 2.2
At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containi... 27 5.1
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH... 27 9.0
>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
Length = 140
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/68 (50%), Positives = 51/68 (75%)
Frame = -3
Query: 253 THLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 74
THLM+R++ VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L ++
Sbjct: 55 THLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDT 114
Query: 73 NGLQLTQP 50
+G+ +P
Sbjct: 115 SGISAVEP 122
Score = 57.6 bits (133), Expect = 4e-09
Identities = 29/54 (53%), Positives = 35/54 (64%)
Frame = -1
Query: 414 MGRVRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFA 253
MGRVR +R+TLDF TNK+I EE+AIIP+K LRNKIAGF+
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFS 54
>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 74.1 bits (174), Expect = 5e-14
Identities = 34/68 (50%), Positives = 50/68 (73%)
Frame = -3
Query: 253 THLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 74
THLM+R++ VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L ++
Sbjct: 55 THLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDT 114
Query: 73 NGLQLTQP 50
G+ +P
Sbjct: 115 PGISAVEP 122
Score = 57.6 bits (133), Expect = 4e-09
Identities = 29/54 (53%), Positives = 35/54 (64%)
Frame = -1
Query: 414 MGRVRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFA 253
MGRVR +R+TLDF TNK+I EE+AIIP+K LRNKIAGF+
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFS 54
>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 74.1 bits (174), Expect = 5e-14
Identities = 34/68 (50%), Positives = 50/68 (73%)
Frame = -3
Query: 253 THLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 74
THLM+R++ VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L ++
Sbjct: 55 THLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDT 114
Query: 73 NGLQLTQP 50
G+ +P
Sbjct: 115 PGISAVEP 122
Score = 57.6 bits (133), Expect = 4e-09
Identities = 29/54 (53%), Positives = 35/54 (64%)
Frame = -1
Query: 414 MGRVRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFA 253
MGRVR +R+TLDF TNK+I EE+AIIP+K LRNKIAGF+
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFS 54
>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
Length = 141
Score = 72.9 bits (171), Expect = 1e-13
Identities = 34/68 (50%), Positives = 49/68 (72%)
Frame = -3
Query: 253 THLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 74
THLM+R++ VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L ++
Sbjct: 55 THLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDT 114
Query: 73 NGLQLTQP 50
G+ P
Sbjct: 115 LGISAVDP 122
Score = 57.6 bits (133), Expect = 4e-09
Identities = 29/54 (53%), Positives = 35/54 (64%)
Frame = -1
Query: 414 MGRVRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFA 253
MGRVR +R+TLDF TNK+I EE+AIIP+K LRNKIAGF+
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFS 54
>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
esculentum]
Length = 140
Score = 72.1 bits (169), Expect = 2e-13
Identities = 33/63 (52%), Positives = 49/63 (77%)
Frame = -3
Query: 253 THLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 74
THLM+R++ VRGIS+KLQEEERERR ++VP+ SA++ D ++VD +T +ML L ++I
Sbjct: 55 THLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDI 114
Query: 73 NGL 65
G+
Sbjct: 115 AGI 117
Score = 57.6 bits (133), Expect = 4e-09
Identities = 29/54 (53%), Positives = 35/54 (64%)
Frame = -1
Query: 414 MGRVRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFA 253
MGRVR +R+TLDF TNK+I EE+AIIP+K LRNKIAGF+
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFS 54
>At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 790
Score = 32.3 bits (70), Expect = 0.18
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -3
Query: 253 THLMRRLRHSQVRGISIKLQEEERE-RRDNYVPEVSALEHDIIEVDPDTKDML 98
T L+ H + + I LQ+ +E RR YVP+ S + HD +E D +DML
Sbjct: 668 TFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHD-VESDGHKEDML 719
>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 301
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 51 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 158
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 287
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 51 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 158
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 612
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 205 IKLQEEERERRDNYVPEVSALEHDIIEVDPD 113
+K EEE R+ YVP+ S + HD+ E + +
Sbjct: 508 LKKLEEEMRIRNGYVPDTSWILHDMDEQEKE 538
>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
identical to SP|Q9SMV7 DNA mismatch repair protein
MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
thaliana}; GC donor splice site at exon 11
Length = 1109
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 353 IQD*HLILIQIKEYVKKSLSFLPSLLGIKLL 261
+ D +L +IK V+ S S LP+LLG K+L
Sbjct: 635 LPDLERLLGRIKSSVRSSASVLPALLGKKVL 665
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,883,874
Number of Sequences: 28952
Number of extensions: 160982
Number of successful extensions: 488
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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