Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0510.Seq
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   2.9  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    25   5.0  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   6.6  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    24   8.7  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    24   8.7  

>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 257 EYENDVFHQNSVIGLLAKPRXGHVILCK--VH*SQKKPMDA*SVLNDFV 117
           EYENDVFH  S    +  P+ G   L K  V+ S+ + M A   +ND +
Sbjct: 297 EYENDVFHYLSEFKSV-DPQRGIAFLPKRGVNVSENEVMRAYKSVNDSI 344


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = +2

Query: 5   FIXHQILNYTL*ISSNTDYSHACVAWKYYLITTARHNLQSHLTQIRHPWAFSVTNEPY 178
           F  + I+NY + +  +  Y+H C     +L++    +++  +T   H +AF    + Y
Sbjct: 286 FPINHIINYEINVLGSFRYAHGCYKQSLFLVSNGLVDVKPLIT---HRFAFKDALKAY 340


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 209 QEVQLQNFDEIHHSHIH 259
           + + LQN D  HH H H
Sbjct: 561 ESISLQNLDNDHHCHHH 577


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 59  YSHACVAWKYYLITTARHNLQSHLTQIRHPWA 154
           + H     +YYL T   H L+ ++T     W+
Sbjct: 524 FLHTLKTARYYLETVQLHQLKKYVTYFSQIWS 555


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +2

Query: 59  YSHACVAWKYYLITTARHNLQSHLTQIRHPWAFSVTNEPYTILHDXILV*QEVQLQN 229
           Y   C  +K ++    + +L+S    +RH  AF+  +     + D I V +E+ + N
Sbjct: 480 YERECNHFKKFVKNELKDSLESQRVDLRHLKAFAFDSSSTKEIDDAISV-EELGMSN 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,458,435
Number of Sequences: 5004
Number of extensions: 24623
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)