Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0510.Seq
         (429 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_35943| Best HMM Match : MFS_1 (HMM E-Value=1.5e-05)                 28   2.9  
SB_15823| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_21126| Best HMM Match : 7tm_1 (HMM E-Value=0.0015)                  27   6.6  

>SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 398 NCNXD*MXFCNFXMSHLYXINLKYYNIHY 312
           N + D + + N    +++  N++YYNIHY
Sbjct: 33  NIHYDNIHYDNIHYDNIHYDNIQYYNIHY 61



 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 398 NCNXD*MXFCNFXMSHLYXINLKYYNIHY 312
           N + D + + N    ++   N+ YYNIHY
Sbjct: 38  NIHYDNIHYDNIHYDNIQYYNIHYYNIHY 66


>SB_35943| Best HMM Match : MFS_1 (HMM E-Value=1.5e-05)
          Length = 514

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 113 NLQSHLTQIRHPWAFSVTNEPYTILHDXI 199
           ++Q H   +  PWA  + +EP T LHD +
Sbjct: 179 SIQDH-GNLPRPWALQLMDEPVTSLHDNV 206


>SB_15823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 637

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 62  SHACVAWKYYLITTARHNLQSHLTQIRHPWAFSVTNE 172
           +H C  W+  L T   +N   H T +R P   + T +
Sbjct: 205 NHDCEGWRRVLSTQCENNGLFHTTSLRRPKGVAATTK 241


>SB_21126| Best HMM Match : 7tm_1 (HMM E-Value=0.0015)
          Length = 195

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 180 QYYMTXSWFSKKSNYRILMKYIILIFIVAY 269
           QYY    W   +  YR    Y ++IF+  Y
Sbjct: 6   QYYCVVEWGDIEETYRTQRLYYLMIFVFLY 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,298,452
Number of Sequences: 59808
Number of extensions: 163495
Number of successful extensions: 231
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)