Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0510.Seq
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69664-6|CAA93513.2| 1159|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr...    26   10.0 
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    26   10.0 
Z78543-3|CAB01755.2|  772|Caenorhabditis elegans Hypothetical pr...    26   10.0 

>Z69664-6|CAA93513.2| 1159|Caenorhabditis elegans Hypothetical
           protein K04D7.4 protein.
          Length = 1159

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 89  YLITTARHNLQSHLTQIRHPWAFSV-TNEPYTILHDXI 199
           +LI+  R N+Q HLT +R   A  V T E Y   H+ I
Sbjct: 863 HLISFRRLNVQGHLTHMRRQRAKLVQTLEQYIFCHEAI 900


>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
           protein F29G6.3c protein.
          Length = 1453

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 110 HNLQSHLTQIRHPWAFSVTNEPYTILHDXILV*QEVQLQNFDEIHHSHIH 259
           H L+  + Q+ H        EPY I+H+       V   +F E  HS  H
Sbjct: 315 HKLEEQVPQVVHEHVIEQHYEPYQIVHEN----HNVLSVDFGEDQHSITH 360


>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
           protein F29G6.3b protein.
          Length = 1785

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 110 HNLQSHLTQIRHPWAFSVTNEPYTILHDXILV*QEVQLQNFDEIHHSHIH 259
           H L+  + Q+ H        EPY I+H+       V   +F E  HS  H
Sbjct: 315 HKLEEQVPQVVHEHVIEQHYEPYQIVHEN----HNVLSVDFGEDQHSITH 360


>Z78543-3|CAB01755.2|  772|Caenorhabditis elegans Hypothetical
           protein F29G6.3a protein.
          Length = 772

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 110 HNLQSHLTQIRHPWAFSVTNEPYTILHDXILV*QEVQLQNFDEIHHSHIH 259
           H L+  + Q+ H        EPY I+H+       V   +F E  HS  H
Sbjct: 315 HKLEEQVPQVVHEHVIEQHYEPYQIVHEN----HNVLSVDFGEDQHSITH 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,869,498
Number of Sequences: 27780
Number of extensions: 134199
Number of successful extensions: 231
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)