Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0510.Seq
         (429 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61350.1 68418.m07698 protein kinase family protein contains ...    27   5.4  
At1g01230.1 68414.m00038 ORMDL family protein contains Pfam doma...    26   9.4  

>At5g61350.1 68418.m07698 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 842

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
 Frame = +2

Query: 80  WKYYLITTARHNLQSHLTQIRHPW------AFSVTNEPYTILHD 193
           + +Y+    RH ++ H   + HP        FSVT +   +LHD
Sbjct: 100 YSFYISRPGRHWIRLHFYPLNHPLYNLTNSVFSVTTDTTVLLHD 143


>At1g01230.1 68414.m00038 ORMDL family protein contains Pfam domain
           PF04061: ORMDL family
          Length = 157

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 92  LITTARHNLQSHLTQIRHPWAF 157
           L+    + + SH T  RHPW F
Sbjct: 107 LVPVVLYLIASHTTDYRHPWLF 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,151,675
Number of Sequences: 28952
Number of extensions: 113585
Number of successful extensions: 180
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)