Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0509.Seq
         (379 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1DBN5 Cluster: Acetyltransferase, GNAT family; n=1; My...    31   7.1  
UniRef50_A5E492 Cluster: Putative uncharacterized protein; n=1; ...    31   9.4  

>UniRef50_Q1DBN5 Cluster: Acetyltransferase, GNAT family; n=1;
           Myxococcus xanthus DK 1622|Rep: Acetyltransferase, GNAT
           family - Myxococcus xanthus (strain DK 1622)
          Length = 298

 Score = 31.1 bits (67), Expect = 7.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 261 GXVLSTACRRGWRTTAGXCYXPDRRQLP 344
           G +L+   RRGWR T G CY    + LP
Sbjct: 117 GPLLAALQRRGWRRTTGGCYLHLAQPLP 144


>UniRef50_A5E492 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 265

 Score = 30.7 bits (66), Expect = 9.4
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -2

Query: 225 TVHRFAYFNALYTSMMHXQI*FKFSTMSFNFSICFYI*LNXAI*TVYTCN 76
           T+H   +FN+ +   +     ++FS +SF+F  CF++    ++ T +  N
Sbjct: 34  TIHLPFFFNSFFPFSLFIPF-YQFSLLSFSFGFCFFLSFVSSVSTCFQIN 82


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,373,871
Number of Sequences: 1657284
Number of extensions: 3425932
Number of successful extensions: 4181
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4181
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14444021678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)