Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0509.Seq
         (379 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    22   1.8  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    22   1.8  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   4.1  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    20   7.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    20   7.2  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 90  VYTCNVNXPCFCFH 49
           +YT N+   CFCF+
Sbjct: 316 IYTFNLFYLCFCFY 329


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 90  VYTCNVNXPCFCFH 49
           +YT N+   CFCF+
Sbjct: 272 IYTFNLFYLCFCFY 285


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 159 KFSTMSFNFSICFY 118
           +F+T+ F+F  C+Y
Sbjct: 264 QFNTIVFSFCYCYY 277



 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 159 KFSTMSFNFSICFY 118
           +F+T+ F F  C+Y
Sbjct: 545 QFNTIVFAFCYCYY 558


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 237 YYHXKXXLGXVLSTACR 287
           YYH    L  VL  AC+
Sbjct: 122 YYHFTLELYTVLGAACQ 138


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 237 YYHXKXXLGXVLSTACR 287
           YYH    L  VL  AC+
Sbjct: 122 YYHFTLELYTVLGAACQ 138


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,334
Number of Sequences: 336
Number of extensions: 1112
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7803226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)