Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0509.Seq
         (379 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U17034-1|AAC50163.1| 1326|Homo sapiens protein ( Human soluble P...    29   6.6  
U17033-1|AAA70110.1| 1465|Homo sapiens 180 kDa transmembrane PLA...    29   6.6  

>U17034-1|AAC50163.1| 1326|Homo sapiens protein ( Human soluble PLA2
           receptor mRNA, complete cds. ).
          Length = 1326

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +3

Query: 234 RYYHXKXXLGXVLSTA---CRRGWRTTAGXCYXPD 329
           R ++     G VLS A   C+ GW  T G CY  D
Sbjct: 498 RLFYICKKAGHVLSDAESGCQEGWEETCGFCYKID 532


>U17033-1|AAA70110.1| 1465|Homo sapiens 180 kDa transmembrane PLA2
           receptor precursor protein.
          Length = 1465

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +3

Query: 234 RYYHXKXXLGXVLSTA---CRRGWRTTAGXCYXPD 329
           R ++     G VLS A   C+ GW  T G CY  D
Sbjct: 498 RLFYICKKAGHVLSDAESGCQEGWEETCGFCYKID 532


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,446,388
Number of Sequences: 237096
Number of extensions: 539089
Number of successful extensions: 478
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)