Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0508.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    23   2.0  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   3.5  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    21   6.2  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    21   6.2  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    21   6.2  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   8.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  

>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 131 SSCQTKPALAMVINDNIKRN 72
           ++C TK AL   +ND +K N
Sbjct: 358 ATCGTKNALLHAVNDAMKAN 377


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 7/10 (70%), Positives = 9/10 (90%), Gaps = 1/10 (10%)
 Frame = +2

Query: 311 GN-YGCKHQW 337
           GN YGC+H+W
Sbjct: 374 GNGYGCEHRW 383


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 28  LLLKPFNRLIMAFTKF-LFMLSLITIASAGF 117
           LL K  N     ++ + LFM++ IT+A  GF
Sbjct: 237 LLQKMGNAYARTYSTYSLFMMANITVAVYGF 267


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 28  LLLKPFNRLIMAFTKF-LFMLSLITIASAGF 117
           LL K  N     ++ + LFM++ IT+A  GF
Sbjct: 237 LLQKMGNAYARTYSTYSLFMMANITVAVYGF 267


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 28  LLLKPFNRLIMAFTKF-LFMLSLITIASAGF 117
           LL K  N     ++ + LFM++ IT+A  GF
Sbjct: 237 LLQKMGNAYARTYSTYSLFMMANITVAVYGF 267


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 226 FPSPDNIKKTNH 261
           +P PD++  TNH
Sbjct: 306 YPIPDHMNTTNH 317


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 69  EVSFYVVINHHRERWLC 119
           E   YV  +   +RWLC
Sbjct: 828 EARHYVQYDQGEDRWLC 844


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 69  EVSFYVVINHHRERWLC 119
           E   YV  +   +RWLC
Sbjct: 828 EARHYVQYDQGEDRWLC 844


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 69  EVSFYVVINHHRERWLC 119
           E   YV  +   +RWLC
Sbjct: 828 EARHYVQYDQGEDRWLC 844


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 69  EVSFYVVINHHRERWLC 119
           E   YV  +   +RWLC
Sbjct: 828 EARHYVQYDQGEDRWLC 844


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,645
Number of Sequences: 336
Number of extensions: 2463
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)