Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0508.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    27   1.6  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   2.7  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   3.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   6.3  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   8.4  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   8.4  

>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 278  IGLSGLWFVFLMLSGEGNEKAKFGILGSNGGIVGICIEGHISLGN 144
            I LS  W   L     GN     GILG    IVG+ ++G  ++GN
Sbjct: 1150 ITLSPKWV--LRSKRAGNSSLVEGILGQTASIVGMPLKGISTVGN 1192


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 127 DDNFPGFPSDMWPSIQIPTIPPFDPKIPNFAFSFPSPDNIK 249
           D  +  +P+  W S  + T  P DP++P  AF    P NIK
Sbjct: 817 DLGYEHYPTCPWISDLLKTYFPQDPEVPFLAFP-DFPFNIK 856


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 208 PNFAFSFPSPDNIKKTNHNPDK 273
           P F+F+F  P+   KTN  P+K
Sbjct: 721 PQFSFNFTKPNTDAKTNLLPEK 742


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
 Frame = +1

Query: 139  PGFPSDMWPSIQIPT----IPPFDPKIPNFAFSFPSPDN 243
            PG PS+  P +  P     + P  PK P    + P+P +
Sbjct: 1436 PGAPSNHAPQVVPPAPMHAVAPVQPKAPGMVTNAPAPSS 1474


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 128 TITFRDSQAICGPLYRSQRF-RHSIPKFRTLL 220
           +I   D   +CGP  ++QRF RH   K    L
Sbjct: 155 SIECTDEDNVCGPSCQNQRFQRHEFAKVDVFL 186


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 80  KRNFVNAIIRRLKGFNNKKIE 18
           K N +NAI++ +K F N K+E
Sbjct: 299 KPNGINAIMKCMKNFANLKVE 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,158
Number of Sequences: 5004
Number of extensions: 43042
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)