Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0508.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0829 - 21792924-21793247,21793332-21793482,21793577-217938... 31 0.39
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 30 1.2
06_01_0881 + 6754600-6754681,6754742-6755284,6755461-6755523,675... 29 1.6
12_02_0671 + 21725663-21726046 29 2.7
07_03_0350 + 17077481-17078225,17078585-17078647,17078773-17078786 28 4.8
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 28 4.8
08_01_0870 - 8491020-8491109,8491523-8491660,8492442-8492568,849... 27 6.3
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 27 6.3
06_01_1113 - 9164953-9165044,9166453-9166586,9166624-9166734,916... 27 6.3
04_04_1621 + 34842062-34842066,34842270-34842921 27 6.3
05_07_0139 - 27968816-27968890,27969065-27969456,27969558-279696... 27 8.4
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379... 27 8.4
01_01_0763 + 5898719-5899021,5899124-5899518,5899619-5899703,589... 27 8.4
>07_03_0829 -
21792924-21793247,21793332-21793482,21793577-21793811,
21793900-21794110,21794218-21794435,21794536-21794671,
21796732-21797517
Length = 686
Score = 31.5 bits (68), Expect = 0.39
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 103 ASAGFVWQDDNFPGFPSDMWPSIQIPTIPPFDPKIPNFAFSF 228
A GF+W + P + + W +Q P +P +F F F
Sbjct: 209 APEGFIWYNGTSPVYRNGPWDGLQFSGEPEMEPNNTSFRFEF 250
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = -3
Query: 185 IVGICIEGHISLGNPGKLSSCQTKPALAMVINDNIKRNFVNAIIRRLKGFNNKKIE 18
+V I +E +++ + GKL + P A + N+ + +V + RLKG+ +K ++
Sbjct: 550 LVNIAVEDSVNIDDDGKLLIREMLPYEAENVMANLVKAWVKERVDRLKGWIDKNLQ 605
>06_01_0881 +
6754600-6754681,6754742-6755284,6755461-6755523,
6755653-6755666
Length = 233
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 139 PGFPS-DMWPSIQIPTIPPFDPKIPNFAFS 225
PG P P+IQIP +PP P +P+ + +
Sbjct: 66 PGLPQLQPLPTIQIPELPPLPPLLPSVSIT 95
>12_02_0671 + 21725663-21726046
Length = 127
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -3
Query: 242 LSGEGNEKAKFGILGSNG---GIVGICIEGHISLGNPGKLSS 126
L+G G+ + G+L + G G VG C+EG G G+L S
Sbjct: 27 LAGGGDRHLQLGMLSTGGECRGTVGECLEGGDVDGEEGELGS 68
>07_03_0350 + 17077481-17078225,17078585-17078647,17078773-17078786
Length = 273
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 139 PGFPS-DMWPSIQIPTIPPFDPKIPNFAFSFPSP 237
PG P P+IQIP +PP P +P+ + + SP
Sbjct: 107 PGLPQLPTLPTIQIPELPPL-PPLPSVSITPGSP 139
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 178 PTIPPFDPKIPNFAFSFPSPDNIKKTNHNPDKPXA 282
P++PP +P +P+ PSP++ + H+P KP A
Sbjct: 193 PSLPPAEPPVPS-----PSPEHPPR--HSPSKPPA 220
>08_01_0870 -
8491020-8491109,8491523-8491660,8492442-8492568,
8492667-8492801,8493262-8493731
Length = 319
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = -3
Query: 347 DHFPIDVCNHSSLPSXAAHVDAAIGLSGLWFVFLMLSGEGNEKAKFGILGSNGGIVGI 174
DH D + ++ PS A AA+ W L G G G GG+VG+
Sbjct: 2 DH-AADHLDPAAPPSGPASSSAAVAEVNAWLASLAAEAGGAGGGGVGAPGGRGGVVGV 58
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +1
Query: 139 PGFPSDMWPSIQIPTIPPFDPKIPNFAFSFPSPDNIKKTNHNPDKP 276
P P P ++ +PP +P P + P P K T P +P
Sbjct: 569 PPAPQAPMPPLKASPVPPPEPSPPPAPKAAPPPPPPKSTGPGPPRP 614
>06_01_1113 -
9164953-9165044,9166453-9166586,9166624-9166734,
9166815-9167066,9167152-9168186,9168313-9169187,
9169476-9169673
Length = 898
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 163 PSIQIPTIPPFDPKIPNFAFSFPSPDNIKKTNHNPDKPXA 282
PS++ P P P P+ +FP+P ++ + +P K A
Sbjct: 478 PSLRSPPRQPTPPPSPSLQPAFPAPQPVQASPTSPAKQHA 517
>04_04_1621 + 34842062-34842066,34842270-34842921
Length = 218
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 106 SAGFVWQDDNFPGFPSDMWPSIQIP 180
+A +W+ + PG SD+W SI++P
Sbjct: 82 AASMLWRTPDVPG-ASDVWDSIEVP 105
>05_07_0139 -
27968816-27968890,27969065-27969456,27969558-27969640,
27969841-27969933,27970012-27970223,27970604-27970753,
27971195-27971254,27971369-27971496,27972008-27972416,
27973514-27973570
Length = 552
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -3
Query: 251 FLMLSGEGNEKAKFGILGSNGGIVGICIEGHISLGNPGKLSSCQTKP 111
FL S N + +F IL NGG G H+SL + S P
Sbjct: 335 FLYPSAVDNFRRQFAILEENGGKSGALDRKHVSLPRATTVHSTSIPP 381
>05_04_0206 +
19034259-19035462,19036870-19037045,19037752-19037975,
19038133-19038914,19039337-19039494
Length = 847
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 157 MWPSIQIPTIPPFDPKIPNFAFSFPSPDNIKKTNHNPDKP 276
M P I T+PP P +P F+ PSP I ++ P P
Sbjct: 119 MPPPPPIDTLPPPPPPLPEFS---PSPAKIHRSKSMPLPP 155
>01_01_0763 +
5898719-5899021,5899124-5899518,5899619-5899703,
5899810-5900032,5900131-5900327,5900531-5900601,
5904034-5904218,5905914-5906068,5906241-5907632,
5907973-5908269
Length = 1100
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 312 GTMVANINGEVIEKKFGED 368
G++ + GEVIEK FGE+
Sbjct: 793 GSLRVTVQGEVIEKSFGEE 811
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,114,136
Number of Sequences: 37544
Number of extensions: 275121
Number of successful extensions: 674
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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