Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0508.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49661| Best HMM Match : DNA_pol_B_exo (HMM E-Value=0)               31   0.70 
SB_11888| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)                   28   3.7  
SB_30449| Best HMM Match : DUF566 (HMM E-Value=1.2)                    28   4.9  
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.9  

>SB_49661| Best HMM Match : DNA_pol_B_exo (HMM E-Value=0)
          Length = 852

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 142 GFPSDMWPSIQIPTIPPFDPKIPNFAF 222
           G PSD WP    P +PPF+P   N  F
Sbjct: 54  GRPSDKWPR---PALPPFEPASDNIQF 77


>SB_11888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 21/52 (40%), Positives = 24/52 (46%)
 Frame = +2

Query: 62  RSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTL 217
           R   F LCC   PSRAL +  R I  RD Q      Y    +RH  P+F  L
Sbjct: 701 RPNYFGLCCQKGPSRALGMLSREI--RDDQVSASSSY---DYRHG-PRFGRL 746


>SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)
          Length = 1624

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 21/54 (38%), Positives = 26/54 (48%)
 Frame = +2

Query: 59   WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLL 220
            WR R F  C    P       GR  + RD++A C P   S R RH+ P+  TLL
Sbjct: 1182 WRKRHFVSCSSRWPR------GRA-SRRDARA-CAPTMPSARLRHTQPRKPTLL 1227


>SB_30449| Best HMM Match : DUF566 (HMM E-Value=1.2)
          Length = 415

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 133 NFPGFPSDMWPSIQ-IPTIPPFDPKIPNFAFSFPSPDNIKKTNHNPDKPXAA 285
           N  G PSD   + Q IPT  P  P +PN+  S  S    +   H P+   +A
Sbjct: 341 NTIGIPSDPESNPQSIPTEGPSKPVVPNYDSSLFSEFAARLVPHEPETAYSA 392


>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1894

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 133  NFPGFPSDMWPSIQ-IPTIPPFDPKIPNFAFSFPSPDNIKKTNHNPDKPXAA 285
            N  G PSD   + Q IPT  P  P +PN+  S  S    +   H P+   +A
Sbjct: 986  NTIGIPSDPESNPQSIPTEGPSKPVVPNYDSSLFSEFAARLVPHEPETAYSA 1037


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,971,905
Number of Sequences: 59808
Number of extensions: 304667
Number of successful extensions: 671
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)