Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0508.Seq
         (499 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036233-1|AAH36233.1|  946|Homo sapiens WDR66 protein protein.        31   2.9  
BC028421-1|AAH28421.1| 1154|Homo sapiens WD repeat domain 66 pro...    31   2.9  
X58141-1|CAA41149.1|  737|Homo sapiens erythrocyte alpha adducin...    29   6.8  
S70314-1|AAB30914.2|  207|Homo sapiens alpha-adducin protein.          29   6.8  
BX465861-4|CAM25274.1|  737|Homo sapiens adducin 1 (alpha) protein.    29   6.8  
AL390065-3|CAM21299.1|  737|Homo sapiens adducin 1 (alpha) protein.    29   6.8  
AL121750-4|CAM28232.1|  737|Homo sapiens adducin 1 (alpha) protein.    29   6.8  

>BC036233-1|AAH36233.1|  946|Homo sapiens WDR66 protein protein.
          Length = 946

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 4   TVLHSSIFLLLKPFNRLIMAFTKFLFMLSLITIASA 111
           T+ HS+  L  K FN+L+  F++ +F L+L  I SA
Sbjct: 434 TLAHSAPLLTEKTFNKLVGKFSQSIFHLNLTQILSA 469


>BC028421-1|AAH28421.1| 1154|Homo sapiens WD repeat domain 66
           protein.
          Length = 1154

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 4   TVLHSSIFLLLKPFNRLIMAFTKFLFMLSLITIASA 111
           T+ HS+  L  K FN+L+  F++ +F L+L  I SA
Sbjct: 434 TLAHSAPLLTEKTFNKLVGKFSQSIFHLNLTQILSA 469


>X58141-1|CAA41149.1|  737|Homo sapiens erythrocyte alpha adducin
           protein.
          Length = 737

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 178 PTIPPFDPKIPNFAFSFPSPDNIKKTNHNPDKPXAAST*AAXE 306
           PT+P   P  P+ A  FP  +  ++  H P  P  A T A+ E
Sbjct: 639 PTLPDLSPDEPSEALGFPMLEK-EEEAHRPPSPTEAPTEASPE 680


>S70314-1|AAB30914.2|  207|Homo sapiens alpha-adducin protein.
          Length = 207

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 178 PTIPPFDPKIPNFAFSFPSPDNIKKTNHNPDKPXAAST*AAXE 306
           PT+P   P  P+ A  FP  +  ++  H P  P  A T A+ E
Sbjct: 109 PTLPDLSPDEPSEALGFPMLEK-EEEAHRPPSPTEAPTEASPE 150


>BX465861-4|CAM25274.1|  737|Homo sapiens adducin 1 (alpha) protein.
          Length = 737

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 178 PTIPPFDPKIPNFAFSFPSPDNIKKTNHNPDKPXAAST*AAXE 306
           PT+P   P  P+ A  FP  +  ++  H P  P  A T A+ E
Sbjct: 639 PTLPDLSPDEPSEALGFPMLEK-EEEAHRPPSPTEAPTEASPE 680


>AL390065-3|CAM21299.1|  737|Homo sapiens adducin 1 (alpha) protein.
          Length = 737

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 178 PTIPPFDPKIPNFAFSFPSPDNIKKTNHNPDKPXAAST*AAXE 306
           PT+P   P  P+ A  FP  +  ++  H P  P  A T A+ E
Sbjct: 639 PTLPDLSPDEPSEALGFPMLEK-EEEAHRPPSPTEAPTEASPE 680


>AL121750-4|CAM28232.1|  737|Homo sapiens adducin 1 (alpha) protein.
          Length = 737

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 178 PTIPPFDPKIPNFAFSFPSPDNIKKTNHNPDKPXAAST*AAXE 306
           PT+P   P  P+ A  FP  +  ++  H P  P  A T A+ E
Sbjct: 639 PTLPDLSPDEPSEALGFPMLEK-EEEAHRPPSPTEAPTEASPE 680


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,121,646
Number of Sequences: 237096
Number of extensions: 1545632
Number of successful extensions: 2945
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2945
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)