Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0508.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81502-5|CAB04108.2|  672|Caenorhabditis elegans Hypothetical pr...    25   1.0  
Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AL032655-7|CAH60798.1|  329|Caenorhabditis elegans Hypothetical ...    27   7.6  
AL032623-13|CAA21504.1|  465|Caenorhabditis elegans Hypothetical...    27   7.6  
Z77136-8|CAB00885.2|  278|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z81502-5|CAB04108.2|  672|Caenorhabditis elegans Hypothetical
           protein F14B6.5 protein.
          Length = 672

 Score = 25.4 bits (53), Expect(2) = 1.0
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 338 PIDVCNHSSLPSXAAHVDAAIGLSGLWFVFLMLSGEGNEKAKFGILGSNG 189
           P++ CNH+SL     +  A IG S       ++  E   KA   + GS G
Sbjct: 429 PLEWCNHTSLEPSGKYKIAVIGNSWAANHGALIHDECGRKANTILQGSAG 478



 Score = 23.0 bits (47), Expect(2) = 1.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 170 IEGHISLGNPGKLSSCQTKP 111
           I  +IS+GNPG +++ +  P
Sbjct: 515 ISRYISVGNPGNITNFEEDP 534


>Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical
           protein F47G9.1 protein.
          Length = 204

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 221 KAKFGILGSNGGIVGICIEGHISLGNPGK 135
           K KF        I  ICIE H   G+PG+
Sbjct: 75  KGKFAFTADEYDIFEICIENHPPAGHPGE 103


>AL032655-7|CAH60798.1|  329|Caenorhabditis elegans Hypothetical
           protein Y6B3B.12 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
 Frame = -2

Query: 222 KSKVRNFGIE--W---RNRWDLYRGPHIAWESRKVIVLPNKA 112
           KS +    +E  W    NR +  + P +AWE RK +  PN A
Sbjct: 72  KSLIETINVEKQWDQDENRQEQIKRPSVAWEVRKSMSSPNPA 113


>AL032623-13|CAA21504.1|  465|Caenorhabditis elegans Hypothetical
           protein Y43F8B.13 protein.
          Length = 465

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -3

Query: 491 YSFVNIKIF*MKLNRKCVVSEMTVT*F*XFYLLGLAXRFFGILSKLFFDHFPIDVCNHSS 312
           Y   N ++F  K     V++   V  F    + G A R    + KLFFD+F I + +HS 
Sbjct: 187 YVRYNAQVFLTKAENMLVLTPPDVVLFSEL-IWGAAAR---CIKKLFFDNFKITITSHSD 242

Query: 311 L 309
           +
Sbjct: 243 I 243


>Z77136-8|CAB00885.2|  278|Caenorhabditis elegans Hypothetical
           protein ZC376.8 protein.
          Length = 278

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 82  MLSLITIASAGFVWQDDNFPGFPSDMWPSIQIPTIPPFDPKIPNFAFSFPSPDNIKK 252
           +L L++IA   FV          S   PS + P  PP  PK+P    + P  D +KK
Sbjct: 21  LLGLVSIAMTVFVCGKPKKKKDVSGA-PSAESPPPPPPAPKVPEPPKAPPPADAVKK 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,377,978
Number of Sequences: 27780
Number of extensions: 238639
Number of successful extensions: 673
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)