Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0508.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   0.33 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   0.77 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.4  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +2

Query: 86  CH*SPSRALALFGRTITFRDSQAICGPLYRSQRFR 190
           C  SPS          + RDS  ICG   RSQ FR
Sbjct: 331 CRCSPSNPSITRTGLSSVRDSSIICGGNKRSQVFR 365


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 155 SLGNPGKLSSCQTKPALA 102
           S  NPG + +C T PA A
Sbjct: 20  SSANPGTIQACTTSPATA 37


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 54  DNGVHEVSFYVVINHHRERWL 116
           DN VH +S Y +I      WL
Sbjct: 23  DNSVHILSKYQLITSTTLNWL 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,592
Number of Sequences: 438
Number of extensions: 3024
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)