Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0508.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g01790.1 68418.m00098 expressed protein 31 0.33
At2g32680.1 68415.m03995 disease resistance family protein conta... 30 1.00
At3g63090.1 68416.m07086 expressed protein 28 3.0
At5g35080.1 68418.m04151 expressed protein 27 5.3
At2g30990.1 68415.m03780 expressed protein contains Pfam profile... 27 5.3
At4g20650.1 68417.m03004 receptor-like protein kinase-related co... 27 7.0
At4g20640.1 68417.m03003 receptor-like protein kinase-related re... 27 7.0
At4g20630.1 68417.m03002 receptor-like protein kinase-related re... 27 7.0
At4g20620.1 68417.m03001 receptor-like protein kinase-related re... 27 7.0
At4g20610.1 68417.m03000 receptor-like protein kinase-related re... 27 7.0
At4g20600.1 68417.m02999 receptor-like protein kinase-related re... 27 7.0
At4g20590.1 68417.m02998 receptor-like protein kinase-related re... 27 7.0
At4g20580.1 68417.m02997 receptor-like protein kinase-related re... 27 7.0
At4g20570.1 68417.m02996 receptor-like protein kinase-related re... 27 7.0
At4g20560.1 68417.m02995 receptor-like protein kinase-related re... 27 7.0
At4g20550.1 68417.m02994 receptor-like protein kinase-related re... 27 7.0
At4g20540.1 68417.m02993 receptor-like protein kinase-related re... 27 7.0
At4g20530.1 68417.m02992 receptor-like protein kinase-related ki... 27 7.0
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 27 7.0
At1g80830.1 68414.m09483 NRAMP metal ion transporter 1 (NRAMP1) ... 27 7.0
At5g05460.1 68418.m00588 glycosyl hydrolase family 85 protein co... 27 9.3
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro... 27 9.3
>At5g01790.1 68418.m00098 expressed protein
Length = 188
Score = 31.5 bits (68), Expect = 0.33
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 115 FVWQDDNFPGFPSDMWPSIQIPTIPPFDPKIPNFAFS 225
F W+ + PG P PS ++PT+PP P +F+FS
Sbjct: 57 FEWE--SHPGTPKH--PSSELPTLPPLTPPPSHFSFS 89
>At2g32680.1 68415.m03995 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 890
Score = 29.9 bits (64), Expect = 1.00
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 395 LGLAXRFFGILSKLFFDHFPIDVCNHSSL 309
L L+ + FG+ S F P+ +CN SSL
Sbjct: 481 LPLSIKGFGVASNSFTSEIPLSICNRSSL 509
>At3g63090.1 68416.m07086 expressed protein
Length = 404
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 305 REGNYGCKHQWGSDRKKVWRGFQKIXEQVLEDRRXKI 415
+E + G + +W S K VW+ ++ E + +D+R K+
Sbjct: 20 KEHSLGIQIRWISSLKVVWKKDTRLDEAIEQDKRYKL 56
>At5g35080.1 68418.m04151 expressed protein
Length = 282
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 58 MAFTKFLFMLSLITIASAGFVWQDDNFP 141
M T+ L L ++ ++S+ VW D FP
Sbjct: 1 MRITQILLCLVIVALSSSSHVWSDQIFP 28
>At2g30990.1 68415.m03780 expressed protein contains Pfam profile:
PF05097 protein of unknown function (DUF688)
Length = 573
Score = 27.5 bits (58), Expect = 5.3
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +1
Query: 139 PGFPSDMWPSIQIPTIPPFDPKIPNFAFSFPSPDN-IKKTNHNPDKPXAAST*AAXEGR 312
P PSD W +PTIPP + DN KT NP T +G+
Sbjct: 514 PKAPSDSWLKRTLPTIPPKNNSFAWLQSLGTDDDNHFTKTQANPKWETMVKTSNTQQGK 572
>At4g20650.1 68417.m03004 receptor-like protein kinase-related
contains Pfam profile: PF01657 Domain of unknown
function; receptor-like protein kinase homolog RK20-1,
Phaseolus vulgaris, gb:AF078082; does not contain a stop
codon. contains Pfam profile: PF01657 Domain of unknown
function that is usually associated with protein kinase
domain Pfam:PF00069
Length = 382
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +2
Query: 59 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 229
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20640.1 68417.m03003 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +2
Query: 59 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 229
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20630.1 68417.m03002 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +2
Query: 59 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 229
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20620.1 68417.m03001 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +2
Query: 59 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 229
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20610.1 68417.m03000 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +2
Query: 59 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 229
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20600.1 68417.m02999 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +2
Query: 59 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 229
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20590.1 68417.m02998 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +2
Query: 59 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 229
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20580.1 68417.m02997 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +2
Query: 59 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 229
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20570.1 68417.m02996 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +2
Query: 59 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 229
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20560.1 68417.m02995 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +2
Query: 59 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 229
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20550.1 68417.m02994 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +2
Query: 59 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 229
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20540.1 68417.m02993 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +2
Query: 59 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 229
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20530.1 68417.m02992 receptor-like protein kinase-related
kinase like proteins, Arabidopsis contains Pfam profile:
PF01657 Domain of unknown function that is usually
associated with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +2
Query: 59 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 229
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +1
Query: 148 PSDMWPSIQIPTIPPFDPKIPNFAFSFPSPDNIKKTNHNPDKPXAAS 288
P PS+ PT PP P P S PSP T+ P P S
Sbjct: 137 PPTPTPSVPSPT-PPVSPPPPTPTPSVPSPTPPVPTDPMPSPPPPVS 182
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +1
Query: 139 PGFPSDMWPSIQIPTIPPFDPKIPNFAFSFPSPDNIKKTNHNPDKP 276
P P+D PS P PP P P S PSP ++ T P P
Sbjct: 167 PPVPTDPMPS---PP-PPVSPPPPTPTPSVPSPPDVTPTPPTPSVP 208
>At1g80830.1 68414.m09483 NRAMP metal ion transporter 1 (NRAMP1)
identical to NRAMP1 protein [Arabidopsis thaliana]
gi|7108911|gb|AAF36535; member of the natural
resistance-associated macrophage protein (NRAMP) metal
transporter family, PMID:11500563
Length = 532
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 213 LCFFVPLS*QH*ENKPQPGQTYXGVYVSXXGGKG 314
+CFFV L +KP PG+ G++V G G
Sbjct: 194 ICFFVELH----YSKPDPGEVLHGLFVPQLKGNG 223
>At5g05460.1 68418.m00588 glycosyl hydrolase family 85 protein
contains similarity to endo-b-N-acetylglucosaminidase
GI:13774138 from [Mucor hiemalis]
Length = 631
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 178 PTIPPFDPKIPNFAFSFP 231
P+ PPFDP P+ SFP
Sbjct: 8 PSPPPFDPTKPSTPISFP 25
>At2g43800.1 68415.m05445 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 894
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 139 PGFPSDMWPSIQIPTIPPFDPKIPNFAFSFPSPDNIKKTNHNPDKP 276
P ++ S+ P PP P PN F FPS D +H P P
Sbjct: 74 PPHEKHLFSSVANPPPPPPSPPHPN-PF-FPSSDPTSTASHPPPAP 117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,824,872
Number of Sequences: 28952
Number of extensions: 228297
Number of successful extensions: 700
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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