Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0507.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   2.5  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    25   5.7  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    24   7.6  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    24   10.0 
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    24   10.0 
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    24   10.0 

>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 154 NWGHSYCDVRGEIXGSSQDEHQRKHLPKVFSSIKNE 47
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 193 VGFQN-SEVMINRDNWGHSYCDVRGEI 116
           VG+ N + ++++   WGHS+ +V  E+
Sbjct: 144 VGYPNEARLLMDNFKWGHSFFEVNEEL 170


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 95  FVLRRSXNFTSNVAIRMPPVIPINHYLGVLK-TNKXXPRSYSIIPCTKY 238
           F ++ S + +++++I   P +PINH     K  N+    +   +P TK+
Sbjct: 149 FEVKNSLHDSTDLSITHHPHLPINHQGNTWKHANESLQSNQGPVPNTKF 197


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 123 VKFXDRRKTNISESICQRCFHQSRTKVRGSKAI 25
           +K+ +R + +    +C +C+    TKV+  +AI
Sbjct: 158 LKYSNRLQASNDTGVCVKCYGGMETKVQVCQAI 190


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +2

Query: 275 LFKVKLSAHLDTHRXAP**DFD---TEPAF 355
           L +  LS H+ TH  AP   FD   T+P++
Sbjct: 152 LCQASLSTHVKTHNNAPLTSFDWCKTDPSY 181


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/57 (21%), Positives = 24/57 (42%)
 Frame = +2

Query: 122 TSNVAIRMPPVIPINHYLGVLKTNKXXPRSYSIIPCTKYSXSIFTRFEHSNLFKVKL 292
           T    +++   +P   + G+   +   P    I  C KY  + ++   HS L  ++L
Sbjct: 208 TRKFLVKLAKALPDAKFFGIFDWD---PHGLCIYSCFKYGSNAYSHEPHSQLRNLQL 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,354,496
Number of Sequences: 5004
Number of extensions: 22051
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)