Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0507.Seq
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0148 - 1337494-1338057                                           27   5.5  
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200...    26   9.5  

>01_01_0148 - 1337494-1338057
          Length = 187

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 60  DENTFGKCFR*CSSCDDPXISP 125
           DE   G+CFR C +C DP   P
Sbjct: 72  DELEPGQCFRQCEACRDPPGRP 93


>04_01_0178 +
           2006369-2006494,2006582-2006664,2007693-2007819,
           2008579-2008638,2009606-2009735,2009821-2010047,
           2010226-2010318,2010395-2010466,2011392-2011532,
           2012045-2012047,2012387-2012443,2012909-2012995,
           2013081-2013116
          Length = 413

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 18/59 (30%), Positives = 24/59 (40%)
 Frame = +2

Query: 137 IRMPPVIPINHYLGVLKTNKXXPRSYSIIPCTKYSXSIFTRFEHSNLFKVKLSAHLDTH 313
           I+M P  P  H+L     N     +    P   YS +I   F H+N F   +   L TH
Sbjct: 53  IKMVPPGP--HFLYYCSPNSYGQNNLHEKPHIDYSSTICDPFRHANEFAPTVGFFLTTH 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,555,641
Number of Sequences: 37544
Number of extensions: 131538
Number of successful extensions: 237
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)