Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0507.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   2e-10
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   2e-08
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               55   2e-08
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               55   2e-08
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   2e-08
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   1e-07
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   3e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   1e-04
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.002
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.007
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.007
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.009
SB_54662| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)                    27   7.4  
SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19)                   27   7.4  

>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 61.7 bits (143), Expect = 2e-10
 Identities = 30/38 (78%), Positives = 31/38 (81%)
 Frame = -2

Query: 116 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTAXVLT 3
           SWI  RRT+AKAFAK VFINQERKLE RRR DT  VLT
Sbjct: 4   SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 27/33 (81%), Positives = 28/33 (84%)
 Frame = -2

Query: 101 RRTSAKAFAKGVFINQERKLEVRRRLDTAXVLT 3
           RRT+AKAFAK VFINQERKLE RRR DT  VLT
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 27/33 (81%), Positives = 28/33 (84%)
 Frame = -2

Query: 101 RRTSAKAFAKGVFINQERKLEVRRRLDTAXVLT 3
           RRT+AKAFAK VFINQERKLE RRR DT  VLT
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 27/33 (81%), Positives = 28/33 (84%)
 Frame = -2

Query: 101 RRTSAKAFAKGVFINQERKLEVRRRLDTAXVLT 3
           RRT+AKAFAK VFINQERKLE RRR DT  VLT
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 27/33 (81%), Positives = 28/33 (84%)
 Frame = -2

Query: 101 RRTSAKAFAKGVFINQERKLEVRRRLDTAXVLT 3
           RRT+AKAFAK VFINQERKLE RRR DT  VLT
Sbjct: 11  RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 43


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 26/32 (81%), Positives = 27/32 (84%)
 Frame = -2

Query: 98  RTSAKAFAKGVFINQERKLEVRRRLDTAXVLT 3
           RT+AKAFAK VFINQERKLE RRR DT  VLT
Sbjct: 29  RTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 60


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = -2

Query: 98 RTSAKAFAKGVFINQERKLEVRRRLDT 18
          RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2  RTTAKAFAKNVFINQERKLEDRRRSDT 28


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 22/34 (64%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
 Frame = -2

Query: 101 RRTS-AKAFAKGVFINQERKLEVRRRLDTAXVLT 3
           R+T+  ++ AK VFINQERKLE RRR DT  VLT
Sbjct: 8   RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLT 41



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 123 VKFXDRRKTNISESICQRCFHQSRTKV 43
           VKF D RKTN  ESI +  F     K+
Sbjct: 2   VKFLDLRKTNYCESIAKNVFINQERKL 28


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 20/34 (58%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
 Frame = -2

Query: 101 RRTS-AKAFAKGVFINQERKLEVRRRLDTAXVLT 3
           R+T+  ++  + VFINQERKLE RRR DT  VLT
Sbjct: 8   RKTNYCESICQDVFINQERKLEDRRRSDTVLVLT 41



 Score = 31.9 bits (69), Expect = 0.20
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -1

Query: 123 VKFXDRRKTNISESICQRCFHQSRTKV 43
           VKF D RKTN  ESICQ  F     K+
Sbjct: 2   VKFLDLRKTNYCESICQDVFINQERKL 28


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -1

Query: 123 VKFXDRRKTNISESICQRCFHQSRTKV 43
           VKF D RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28



 Score = 36.3 bits (80), Expect = 0.009
 Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = -2

Query: 101 RRTS-AKAFAKGVFINQERKLEVRRRLDTAXVLT 3
           R+T+  ++  +  FINQERKLE RRR DT  VLT
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLT 41


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -1

Query: 123 VKFXDRRKTNISESICQRCFHQSRTKV 43
           VKF D RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28



 Score = 36.3 bits (80), Expect = 0.009
 Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = -2

Query: 101 RRTS-AKAFAKGVFINQERKLEVRRRLDTAXVLT 3
           R+T+  ++  +  FINQERKLE RRR DT  VLT
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLT 41


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 36.3 bits (80), Expect = 0.009
 Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = -2

Query: 101 RRTS-AKAFAKGVFINQERKLEVRRRLDTAXVLT 3
           R+T+  ++  +  FINQERKLE RRR DT  VLT
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLT 41



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 105 RKTNISESICQRCFHQSRTKV 43
           RKTN  ESICQ CF     K+
Sbjct: 8   RKTNYCESICQECFINQERKL 28


>SB_54662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 154 NWGHSYCDVRGEIXGSSQ 101
           N+GHSY  +RG I G +Q
Sbjct: 635 NFGHSYVQIRGYIGGEAQ 652


>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 185 KTNKXXPRSYSIIPCTKYSXSIFTRFEHSNLFKVKLSAHL 304
           K +      Y+ +    +S   F RFEH+N  ++KL+ ++
Sbjct: 725 KNHSVDKHDYNNVTPLLFSQERFERFEHNNSLEIKLTVNI 764


>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 184 QNSEVMINRDNWGHSY-CDVRGEIXGSSQDEHQRKHLP 74
           Q  EV  +++  GH Y C   GE+  S++D H+   +P
Sbjct: 7   QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44


>SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)
          Length = 575

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 209 SYSIIPCTKYSXSIFTRFEH 268
           +Y  IPCT Y+ ++++RF H
Sbjct: 127 TYRGIPCTNYTENLWSRFWH 146


>SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19)
          Length = 605

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 209 SYSIIPCTKYSXSIFTRFEH 268
           +Y  IPCT Y+ ++++RF H
Sbjct: 58  TYRGIPCTNYTENLWSRFWH 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,057,756
Number of Sequences: 59808
Number of extensions: 164681
Number of successful extensions: 309
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)