Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0507.Seq
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10890.1 68417.m01772 expressed protein                             27   3.5  
At2g36350.1 68415.m04461 protein kinase, putative similar to pro...    27   6.1  

>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 105 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSN 4
           ++T I   +C RC+H S R K+R S   R   S++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNS 228


>At2g36350.1 68415.m04461 protein kinase, putative similar to
           protein kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 949

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 255 PALSTLICSK*NCRPTSTLTEXH 323
           P+ S L+C K +C   ST TE H
Sbjct: 391 PSASQLLCQKCHCAVKSTSTENH 413


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,999,884
Number of Sequences: 28952
Number of extensions: 112804
Number of successful extensions: 218
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)