Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0505.Seq
         (528 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RWM9 Cluster: Palmitoyltransferase SWF1; n=5; Pezizom...    33   4.1  
UniRef50_UPI000049A038 Cluster: serine protease inhibitor; n=1; ...    32   7.1  
UniRef50_A1ID20 Cluster: Pyruvate ferredoxin oxidoreductase, alp...    32   9.4  

>UniRef50_Q7RWM9 Cluster: Palmitoyltransferase SWF1; n=5;
           Pezizomycotina|Rep: Palmitoyltransferase SWF1 -
           Neurospora crassa
          Length = 429

 Score = 33.1 bits (72), Expect = 4.1
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 150 PYFFMTLNQYNTPGFVGLITH*FLKKL*RFMTEFYVYIP--KCXDCCLIK 7
           PY F+ L+ Y  PG +   TH  ++++ R+  +F ++ P   C  C L+K
Sbjct: 118 PYIFLYLSAYTDPGVINAKTH--VREMARYPYDFTLFHPGTSCETCHLLK 165


>UniRef50_UPI000049A038 Cluster: serine protease inhibitor; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: serine protease
           inhibitor - Entamoeba histolytica HM-1:IMSS
          Length = 371

 Score = 32.3 bits (70), Expect = 7.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 168 DFIFNKPYFFMTLNQYNTPGFVGLITH 88
           D I NKPYFF+ + +   P F G ++H
Sbjct: 341 DVIINKPYFFVIIGEEQYPLFFGKVSH 367


>UniRef50_A1ID20 Cluster: Pyruvate ferredoxin oxidoreductase, alpha
           subunit; n=1; Candidatus Desulfococcus oleovorans
           Hxd3|Rep: Pyruvate ferredoxin oxidoreductase, alpha
           subunit - Candidatus Desulfococcus oleovorans Hxd3
          Length = 396

 Score = 31.9 bits (69), Expect = 9.4
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 252 YISYMLSHTRIEFEQPTEEQAESVVA--EPDFIFNKPYFFMTLNQYNTP 112
           Y  Y+LSHT + F+ P  +QA++ +A   P  + N P   M LN    P
Sbjct: 163 YDGYLLSHTHMPFDVPDPDQADAFLAGSSPSALLN-PARPMNLNTVTLP 210


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 448,938,110
Number of Sequences: 1657284
Number of extensions: 7493920
Number of successful extensions: 16693
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16692
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33455602480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)