Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0505.Seq
         (528 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   2.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   5.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   5.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   5.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   5.1  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -1

Query: 243 YMLSHTRIEFEQPTEEQAESVVAEP 169
           + L + + E+E P+EE  + ++ +P
Sbjct: 320 HRLVYFQNEYEHPSEEDVKRIINQP 344


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -3

Query: 334 KLKGPDS*QSFLRKTSTASIRSMTINQIYILHVEPY 227
           K  GPDS  SF+   +   + S       + H  PY
Sbjct: 363 KSLGPDSVYSFINNLTDRKLLSAWYMNTVLGHQNPY 398


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -3

Query: 334 KLKGPDS*QSFLRKTSTASIRSMTINQIYILHVEPY 227
           K  GPDS  SF+   +   + S       + H  PY
Sbjct: 255 KSLGPDSVYSFINNLTDRKLLSAWYMNTVLGHQNPY 290


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 191 ACSSVGCSNSI 223
           ACSS GCS  +
Sbjct: 349 ACSSAGCSQKV 359


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/33 (21%), Positives = 14/33 (42%)
 Frame = -1

Query: 207 PTEEQAESVVAEPDFIFNKPYFFMTLNQYNTPG 109
           P +    + ++ P  ++N P        Y+ PG
Sbjct: 269 PMQRPKSASLSPPPHVYNPPDHIQQATPYSAPG 301


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,274
Number of Sequences: 336
Number of extensions: 1920
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)