Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0505.Seq
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    27   1.7  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   2.3  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    26   3.0  
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c...    25   7.0  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    25   7.0  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    25   9.2  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    25   9.2  

>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 452 LKATLRSSLSFNEVPKTTDXPPSQI 526
           LK  L+  + F+EVP T+  PP +I
Sbjct: 666 LKKPLKKRVRFSEVPTTSSVPPVEI 690


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -1

Query: 216  FEQPTEEQAESVVAEPDFIFNKP 148
            + +PT E+A++V+AE + + NKP
Sbjct: 1074 YSRPTIEEAKTVLAESENLTNKP 1096


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 304 FLRKTSTASIRSMTINQIYIL 242
           F+  TS  SI+ M+INQ+Y+L
Sbjct: 264 FIDDTSKISIKWMSINQLYLL 284


>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 243 RIYI*FIVIDRIEAVEVFLKKLCQESGP 326
           R YI  +++   EAVE FL     +SGP
Sbjct: 137 RPYIQSLIVTHNEAVERFLLSFSNQSGP 164


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 495 GTSLNDNEDLSVAFNELRDPATXPYI 418
           G S++DN  LS+A N+  +    P+I
Sbjct: 376 GFSVSDNSPLSLALNQYMEDLLVPFI 401


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 240 MLSHTRIEFEQPTEEQAESVVAEPDFI 160
           ++S T++  E   +E  ESV+ EPD +
Sbjct: 180 VISSTQVTLELIDKELKESVIPEPDLL 206


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 106 RWPYYALIFKKVIKIHDRILCLHSK 32
           +WP++  +   V  IH   L LH K
Sbjct: 510 QWPHFFAVLDHVFSIHQTHLELHGK 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,898,630
Number of Sequences: 5004
Number of extensions: 33570
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)