Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0505.Seq
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    28   4.1  
SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 121 VLVESHEEIGLVEDEVWLGNHAFSLLFCGLFELNTRMA-QHVGYI 252
           VL E H+ +  VE E+   N + +L  CGL  L + +A Q  G+I
Sbjct: 111 VLPEDHQSLRKVESEIVCENPSLALGLCGLTALTSLIALQERGHI 155


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = -3

Query: 115 TRLRWPYYALIFKKVIKIHDRILCLHSKM 29
           TRLR  YY  +++KVI  H R++ +++KM
Sbjct: 799 TRLR-VYYNRVYRKVIIRHGRLVIMYNKM 826


>SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2429

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 258 IRYISYMLSHTRIEFEQPTEEQAESVVAEPDFIFNKPYFFMTLNQY 121
           I Y+ Y+L   ++E E P  E    +  EP   F KP FF    +Y
Sbjct: 645 ISYVWYVLQKKKVENEDPWIEVWRFLGKEPRMSF-KPKFFDIRKEY 689


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,695,544
Number of Sequences: 59808
Number of extensions: 228268
Number of successful extensions: 439
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)