Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0505.Seq
         (528 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-3069|AAF53784.1|  182|Drosophila melanogaster CG13086-P...    29   5.2  
BT004487-1|AAO42651.1|  371|Drosophila melanogaster LD23561p pro...    28   9.0  
BT001818-1|AAN71573.1|  329|Drosophila melanogaster RH40150p pro...    28   9.0  
AY047569-1|AAK77301.1|  336|Drosophila melanogaster GH08163p pro...    28   9.0  
AE014297-3413|AAN13961.1|  329|Drosophila melanogaster CG5854-PB...    28   9.0  
AE014297-3412|AAF56208.1|  371|Drosophila melanogaster CG5854-PA...    28   9.0  
AE014297-1310|AAN13507.1|  298|Drosophila melanogaster CG5308-PB...    28   9.0  
AE014297-1309|AAF54647.2|  336|Drosophila melanogaster CG5308-PA...    28   9.0  

>AE014134-3069|AAF53784.1|  182|Drosophila melanogaster CG13086-PA
           protein.
          Length = 182

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = -3

Query: 199 RAS*KRGCRARLHLQQAL---FLHDSQPIQYTRLRWPY 95
           RA+ K+  R RLH+  AL   FL ++ P++ TR R PY
Sbjct: 4   RATRKKYRRIRLHIFLALSLWFLIEAHPVEGTRCRNPY 41


>BT004487-1|AAO42651.1|  371|Drosophila melanogaster LD23561p
           protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 323 AGLLTELFEKNFDGFDTVYDNKSDIYPT 240
           + LL ++F+ N D F  V  N + +YPT
Sbjct: 259 SNLLVDIFDINLDFFGLVMSNLAKLYPT 286


>BT001818-1|AAN71573.1|  329|Drosophila melanogaster RH40150p
           protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 323 AGLLTELFEKNFDGFDTVYDNKSDIYPT 240
           + LL ++F+ N D F  V  N + +YPT
Sbjct: 217 SNLLVDIFDINLDFFGLVMSNLAKLYPT 244


>AY047569-1|AAK77301.1|  336|Drosophila melanogaster GH08163p
           protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 377 PIELTLRDSRDXXPEVKRAGLLTELFEKNFDGFDTVYDNKSD 252
           P++   R S      +  A  L+ L   N+D  D V+DN +D
Sbjct: 56  PVDKQSRRSSQYFGHLAAAEELSNLIPDNYDAIDPVFDNTTD 97


>AE014297-3413|AAN13961.1|  329|Drosophila melanogaster CG5854-PB,
           isoform B protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 323 AGLLTELFEKNFDGFDTVYDNKSDIYPT 240
           + LL ++F+ N D F  V  N + +YPT
Sbjct: 217 SNLLVDIFDINLDFFGLVMSNLAKLYPT 244


>AE014297-3412|AAF56208.1|  371|Drosophila melanogaster CG5854-PA,
           isoform A protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 323 AGLLTELFEKNFDGFDTVYDNKSDIYPT 240
           + LL ++F+ N D F  V  N + +YPT
Sbjct: 259 SNLLVDIFDINLDFFGLVMSNLAKLYPT 286


>AE014297-1310|AAN13507.1|  298|Drosophila melanogaster CG5308-PB,
           isoform B protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 377 PIELTLRDSRDXXPEVKRAGLLTELFEKNFDGFDTVYDNKSD 252
           P++   R S      +  A  L+ L   N+D  D V+DN +D
Sbjct: 18  PVDKQSRRSSQYFGHLAAAEELSNLIPDNYDAIDPVFDNTTD 59


>AE014297-1309|AAF54647.2|  336|Drosophila melanogaster CG5308-PA,
           isoform A protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 377 PIELTLRDSRDXXPEVKRAGLLTELFEKNFDGFDTVYDNKSD 252
           P++   R S      +  A  L+ L   N+D  D V+DN +D
Sbjct: 56  PVDKQSRRSSQYFGHLAAAEELSNLIPDNYDAIDPVFDNTTD 97


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,611,883
Number of Sequences: 53049
Number of extensions: 333748
Number of successful extensions: 657
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1970722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)