Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0505.Seq
         (528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67360.1 68418.m08494 cucumisin-like serine protease (ARA12) ...    28   3.4  
At1g29150.1 68414.m03567 26S proteasome regulatory subunit, puta...    27   7.8  

>At5g67360.1 68418.m08494 cucumisin-like serine protease (ARA12)
           Asp48; almost identical to cucumisin-like serine
           protease (ARA12) GI:3176874 from [Arabidopsis thaliana]
          Length = 757

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 204 TEEQAESVVAEPDFIFNKPYFFMTLNQYNTPGFVGLITH 88
           T+E+A+S++ +P  I   P     L+   TP F+GL  H
Sbjct: 81  TQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEH 119


>At1g29150.1 68414.m03567 26S proteasome regulatory subunit,
           putative (RPN6) similar to 19S proteosome subunit 9
           GB:AAC34120 GI:3450889 from [Arabidopsis thaliana]
          Length = 419

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -1

Query: 507 SVVLGTSLNDNEDLSVAFNELRDPATXPYILTQTESXYLKLCSSDRIDIER 355
           ++ L    N +E +++ +  L DP++ P  +   E     LC  DR+  E+
Sbjct: 10  TISLALEANSSEAITILYQVLEDPSSSPEAIRIKEQAITNLC--DRLTEEK 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,609,021
Number of Sequences: 28952
Number of extensions: 165374
Number of successful extensions: 347
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)