Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0503.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    31   0.009
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   0.76 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   0.76 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.8  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   7.1  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   7.1  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    21   9.4  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 30.7 bits (66), Expect = 0.009
 Identities = 16/70 (22%), Positives = 33/70 (47%)
 Frame = -2

Query: 445 VTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFN 266
           V  EREK  S+ ++ E + +E      +DK +  + G +     K E+  ++ +  + + 
Sbjct: 215 VEKEREKELSDDEAEEEKKEEEGEDKDKDKPKIEDVGEDEDEDTKKEDKKKKKTIKEKYT 274

Query: 265 DGDARLTTKP 236
           + +    TKP
Sbjct: 275 EDEELNKTKP 284



 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 248 DXQTKSKKVEKNSARDKKEKEKTDTRNSDGTYKTSEREK 132
           + + + K  +K    D  E E  DT+  D   K + +EK
Sbjct: 234 EEEGEDKDKDKPKIEDVGEDEDEDTKKEDKKKKKTIKEK 272


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -2

Query: 352 RSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDARLTTKPNLRR-LKRILPEIKRKRKKLT 176
           RS    S++   G   ++      +K+  DG+     KP++++ L   +  +K  R K+ 
Sbjct: 439 RSEKPESKKDKKGSQVDHKNNLGDSKNNQDGNNGEKKKPHIKKPLNAFMLYMKEMRAKVV 498

Query: 175 QE 170
            E
Sbjct: 499 AE 500


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -2

Query: 352 RSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDARLTTKPNLRR-LKRILPEIKRKRKKLT 176
           RS    S++   G   ++      +K+  DG+     KP++++ L   +  +K  R K+ 
Sbjct: 331 RSEKPESKKDKKGSQVDHKNNLGDSKNNQDGNNGEKKKPHIKKPLNAFMLYMKEMRAKVV 390

Query: 175 QE 170
            E
Sbjct: 391 AE 392


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 236 KSKKVEKNSARDKKEKEKTDTRNSDGT 156
           KSK+ EK+ +  ++    TD    DGT
Sbjct: 689 KSKQNEKSPSPQQRSPSVTDLSTKDGT 715


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 167 NFLCQFFPFPFY 202
           NF+  FF  PFY
Sbjct: 359 NFVSTFFKIPFY 370


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 78  RGIPRVAALTLIH 116
           +GIPR+A+L L H
Sbjct: 415 KGIPRLASLNLGH 427


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -2

Query: 310 DEEYSEQNSSNKSFNDGDARLTTKPNLRRLKRILPEIKRKRKKLTQEILTERTK 149
           DE  + +      FN    R    P+   LKR+LP+  +       E   E TK
Sbjct: 29  DEILASERLLKNYFNCIMDRGACTPDADELKRVLPDALKSDCAKCSEKQKEMTK 82


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,166
Number of Sequences: 336
Number of extensions: 1884
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)