Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0502.Seq
         (349 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23G83 Cluster: Hypothetical repeat containing protein;...    33   1.4  
UniRef50_Q18AQ4 Cluster: Putative ABC transporter, permease prot...    32   2.4  
UniRef50_Q4RRV2 Cluster: Chromosome 7 SCAF15001, whole genome sh...    31   4.1  
UniRef50_A5CC39 Cluster: Putative uncharacterized protein; n=1; ...    31   5.5  
UniRef50_Q60QC4 Cluster: Putative uncharacterized protein CBG218...    31   5.5  
UniRef50_Q4V6B0 Cluster: IP11552p; n=2; Sophophora|Rep: IP11552p...    31   5.5  
UniRef50_Q8IB61 Cluster: Putative uncharacterized protein MAL8P1...    31   7.2  

>UniRef50_Q23G83 Cluster: Hypothetical repeat containing protein; n=2;
            Alveolata|Rep: Hypothetical repeat containing protein -
            Tetrahymena thermophila SB210
          Length = 2930

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +1

Query: 31   HFTQLSCCIHYLTDKAHEFANNKYVGFFHKNNXXSLMIEISTLFTISVDSKNKSS 195
            HF Q+S C++++  +    ++N YV   +  +  +++I++ST F +     N SS
Sbjct: 991  HFCQISICLNFMQIQNANISSNLYVIPKYLTDTITVIIQLSTCFFVPNSGLNSSS 1045


>UniRef50_Q18AQ4 Cluster: Putative ABC transporter, permease
           protein; n=3; Clostridium difficile|Rep: Putative ABC
           transporter, permease protein - Clostridium difficile
           (strain 630)
          Length = 229

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +1

Query: 25  HFHFTQLSCCIHYLTDKAHEFANNKYVGFFHKNNXXSLMIEISTLFTISVDSKNK 189
           HF+++++     YL++   + AN KY+  +       ++  IS  F+I +  KNK
Sbjct: 174 HFNYSKVGGV--YLSNYVTDIANTKYINLYSMTFLTIIIFIISMYFSIKISKKNK 226


>UniRef50_Q4RRV2 Cluster: Chromosome 7 SCAF15001, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 7 SCAF15001, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 604

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 43  LSCCIHYLTDKAHEFANNKYVG 108
           LSCC+HY  DKA +F  N+  G
Sbjct: 542 LSCCLHYCKDKAKDFMPNEKNG 563


>UniRef50_A5CC39 Cluster: Putative uncharacterized protein; n=1;
           Orientia tsutsugamushi Boryong|Rep: Putative
           uncharacterized protein - Orientia tsutsugamushi (strain
           Boryong) (Rickettsia tsutsugamushi)
          Length = 485

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +1

Query: 79  HEFANNKYVGFFHKNNXXSLMIEISTLFTISVDSKNKSSQGHRCTCSMXKKRXXYKN 249
           H+F NN YV      N  +L  E   +  +S+D +N+  Q    + S  + +  Y N
Sbjct: 130 HQFINNNYVPSILTKNIINLSAETRNIQLVSIDLQNEQLQSTLDSPSSEQLQEFYNN 186


>UniRef50_Q60QC4 Cluster: Putative uncharacterized protein CBG21875;
           n=2; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG21875 - Caenorhabditis
           briggsae
          Length = 288

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 94  NKYVGFFHKNNXXSLMIEISTLFTISVDSKNKSSQGHRCTCSMXKKRXXYKNLYF 258
           N+++G F   N      EI T +T+ + SKN+     R    + ++R  Y  LYF
Sbjct: 44  NEHLGIFLHTNVTGNQ-EIHTNYTLRIFSKNREKNHSRSLSRVFERRCIYGCLYF 97


>UniRef50_Q4V6B0 Cluster: IP11552p; n=2; Sophophora|Rep: IP11552p -
           Drosophila melanogaster (Fruit fly)
          Length = 319

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 115 HKNNXXSLMIEISTLFTISVDSKNKSSQGHRC 210
           H+N    L+I +S   TI + S+N +S GHRC
Sbjct: 5   HQNLSIQLVIFLSLAVTICLGSQNATSCGHRC 36


>UniRef50_Q8IB61 Cluster: Putative uncharacterized protein
           MAL8P1.45; n=2; Plasmodium|Rep: Putative uncharacterized
           protein MAL8P1.45 - Plasmodium falciparum (isolate 3D7)
          Length = 891

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +1

Query: 55  IHYLTDKAHEFANNKYVGF--FHKNNXXSLMIEISTLFTISVDSKNKSSQGHRCTCSMXK 228
           + YL +  ++  N  Y  +   HKNN   +       + IS + KNKS     C+C   +
Sbjct: 712 LKYLNNDDNDLLNENYKNYESVHKNNECKVTDMYQYEYAISYNEKNKS-----CSCPNNQ 766

Query: 229 KRXXYKNLY 255
               +K++Y
Sbjct: 767 SPCYFKDIY 775


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 284,296,350
Number of Sequences: 1657284
Number of extensions: 4512855
Number of successful extensions: 7225
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7225
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 11131607110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)