Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0502.Seq
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1749 + 29201116-29201193,29201294-29201371,29201442-292015...    26   9.3  
03_03_0137 - 14759337-14759508,14759616-14759813,14759917-147601...    26   9.3  

>07_03_1749 +
           29201116-29201193,29201294-29201371,29201442-29201540,
           29202958-29203020,29203101-29203298,29203359-29203472,
           29203744-29203806,29203912-29204208,29204774-29204935,
           29205061-29205244,29205771-29205820
          Length = 461

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 205 CDPGNFCSSNQQKL*IKSIFQSSMXRXYFCEKNP 104
           C P  FC+SN  K   K I +  + R Y   K P
Sbjct: 300 CTPPEFCTSNMTKGTFKKI-REELMRGYALTKEP 332


>03_03_0137 -
           14759337-14759508,14759616-14759813,14759917-14760116,
           14760197-14760310,14760386-14760572,14760984-14761225,
           14762326-14762424,14762505-14762836,14762931-14763039
          Length = 550

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 50  AVYII*QIR-PTNLRTINTWVFFTKIXTXH 136
           A+ I+  IR P NL T+  W+ F  + + H
Sbjct: 417 ALLIVTAIRNPENLHTVPLWILFESVMSMH 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,144,607
Number of Sequences: 37544
Number of extensions: 105976
Number of successful extensions: 165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)