Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0502.Seq
         (349 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10140| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_3583| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.3  
SB_17128| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  

>SB_10140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 103 RIYCSQIRGPYLLNNVYSTTIV*SG 29
           RIY S+ RG YL+ NV   T++  G
Sbjct: 128 RIYSSKRRGAYLILNVSGETVIRGG 152


>SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 173 LIRRTKVPRVTDVHVRCXK 229
           ++RR K+PR T  H RC K
Sbjct: 652 IVRRDKLPRATIFHRRCPK 670


>SB_3583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 880

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 184 SSNQQKL*I--KSIFQSSMXRXYFCEKNPRIYCSQIR 80
           S+N Q+L I   S+F   +   + C+   RIYCS+I+
Sbjct: 675 SANTQRLLIILASVFGGLVFLAFLCDIFMRIYCSKIK 711


>SB_17128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 256 SKDSYRXVFFXTSNMYICDPGNFCSSNQQK 167
           S + Y  +    SN+ + DPGN  S+N+ K
Sbjct: 404 SSEEYTILSDDESNLTLEDPGNMVSTNKNK 433


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,981,167
Number of Sequences: 59808
Number of extensions: 147030
Number of successful extensions: 222
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)