Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0502.Seq
         (349 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064916-1|AAH64916.1|  511|Homo sapiens SMG6 protein protein.         29   3.0  
AY168921-1|AAO17581.1| 1388|Homo sapiens Est1p-like protein A pr...    29   3.0  
AY145883-1|AAN46114.1| 1419|Homo sapiens telomerase subunit EST1...    29   3.0  
AB018275-1|BAA34452.2| 1449|Homo sapiens KIAA0732 protein protein.     29   3.0  
AY129019-1|AAM98762.1|  123|Homo sapiens unknown protein.              29   5.3  

>BC064916-1|AAH64916.1|  511|Homo sapiens SMG6 protein protein.
          Length = 511

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 43  LSCCIHYLTDKAHEF 87
           LSCC+HY  DKA +F
Sbjct: 449 LSCCLHYCKDKAKDF 463


>AY168921-1|AAO17581.1| 1388|Homo sapiens Est1p-like protein A
            protein.
          Length = 1388

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 43   LSCCIHYLTDKAHEF 87
            LSCC+HY  DKA +F
Sbjct: 1326 LSCCLHYCKDKAKDF 1340


>AY145883-1|AAN46114.1| 1419|Homo sapiens telomerase subunit EST1A
            protein.
          Length = 1419

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 43   LSCCIHYLTDKAHEF 87
            LSCC+HY  DKA +F
Sbjct: 1357 LSCCLHYCKDKAKDF 1371


>AB018275-1|BAA34452.2| 1449|Homo sapiens KIAA0732 protein protein.
          Length = 1449

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 43   LSCCIHYLTDKAHEF 87
            LSCC+HY  DKA +F
Sbjct: 1387 LSCCLHYCKDKAKDF 1401


>AY129019-1|AAM98762.1|  123|Homo sapiens unknown protein.
          Length = 123

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -1

Query: 211 YICDPGNFCSSNQQKL*IKSIFQSSMXRXYFCEKNPRIYCSQIR 80
           +ICDP  FCSS+      K++    +   ++C      +C  I+
Sbjct: 27  FICDPRQFCSSSSIPREAKTLDTPGLYYNFYCYFRAYSFCLYIK 70


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,085,650
Number of Sequences: 237096
Number of extensions: 668187
Number of successful extensions: 723
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)