Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0502.Seq
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024793-2|AAT39976.1|  338|Caenorhabditis elegans Hypothetical ...    27   2.8  
U29377-2|AAA68713.4|  627|Caenorhabditis elegans Hypothetical pr...    27   3.7  
U29377-1|AAZ94294.1|  773|Caenorhabditis elegans Hypothetical pr...    27   3.7  

>AC024793-2|AAT39976.1|  338|Caenorhabditis elegans Hypothetical
           protein Y48G1BL.7 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 37  TQLSCCIHYLTDKAHEFANNKYVG 108
           T L+C +  + D+ H FA N Y G
Sbjct: 201 TNLTCFVDKMYDRMHRFARNPYKG 224


>U29377-2|AAA68713.4|  627|Caenorhabditis elegans Hypothetical
           protein K05F1.6b protein.
          Length = 627

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 100 YVGFFHKNNXXSLMIEISTLF 162
           + G+FH NN  +  IEI TLF
Sbjct: 372 FTGYFHLNNGIAGAIEIPTLF 392


>U29377-1|AAZ94294.1|  773|Caenorhabditis elegans Hypothetical
           protein K05F1.6a protein.
          Length = 773

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 100 YVGFFHKNNXXSLMIEISTLF 162
           + G+FH NN  +  IEI TLF
Sbjct: 518 FTGYFHLNNGIAGAIEIPTLF 538


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,893,578
Number of Sequences: 27780
Number of extensions: 116676
Number of successful extensions: 221
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)