Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0502.Seq
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   4.2  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   4.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   7.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   7.3  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -1

Query: 121 FCEKNPRI 98
           FCEKNP++
Sbjct: 86  FCEKNPKL 93


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -1

Query: 121 FCEKNPRI 98
           FCEKNP++
Sbjct: 87  FCEKNPKL 94


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 245 RIFTFKRWGII 277
           R F+F +WGI+
Sbjct: 505 RFFSFHQWGIL 515


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 70  LLNNVYST 47
           LLNNVYST
Sbjct: 404 LLNNVYST 411


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 280 RYYSPAFKSKDSYR 239
           R Y PAF+ K S R
Sbjct: 415 RRYQPAFRCKPSQR 428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,896
Number of Sequences: 438
Number of extensions: 1775
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)