Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0501.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces pomb...    31   0.17 
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    27   1.6  
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    27   2.1  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    26   3.6  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    26   3.6  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   6.3  
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ...    25   6.3  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    25   8.4  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    25   8.4  

>SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 109

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 194 NALPTRQYLDQTVVPILLQG 253
           N+ P RQYL++ V P+LL+G
Sbjct: 3   NSAPARQYLNEKVTPVLLEG 22


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 170  NRKSRIDLNALPTRQYLDQTVVPILLQ 250
            NR+ R++ + LP + Y+DQ  +  L++
Sbjct: 1333 NRELRLEFSVLPCKMYIDQDTLDFLIR 1359


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 23  FFKVQLK*LQPMSESSTQINHNMEEQSTTKIPDSVKKIILMEKDNEANANRKSR 184
           F  V LK  Q    SS  I H +EE +   I   VKK   +E + + N   + +
Sbjct: 9   FMNVNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYDQIESEYKTNIENEKK 62


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 104  TTKIPDSVKKIILMEKDNEANANRK 178
            T KI + VK I+++++DN    NRK
Sbjct: 1165 TDKIMEVVKAILIVQRDNGDRENRK 1189


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 80  NHNMEEQSTTKIPDSVKKIILMEKDNEANANRKSRI 187
           + N  ++ TTK  +S+KKI L E + +  A ++S +
Sbjct: 88  SENELDEETTKNANSIKKISLEEVEKQRKAIKRSGV 123


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 529 NNRXIKXEQFTPLSFAVYVTR*VSNKMFP 443
           +NR IK  Q+TPL+ ++ +   + N ++P
Sbjct: 12  SNRIIKGLQYTPLASSIPLENGLQNVLYP 40


>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 199 STDSTVFGPDSSXHTAARSSALAKERPPDPINY 297
           STDS   G ++S    +R+S L  E+  +PI++
Sbjct: 203 STDSAFSGQENSEAFPSRTSNLGSEQLDEPISH 235


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 95  EQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPT 208
           +  T KI D  K    + + ++ N  RKS ++LNAL T
Sbjct: 121 DSGTLKIVDEKK---YLREISQCNRTRKSFVELNALQT 155


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 247 ARSSALAKERPPDPINYLAAYLLKNKTTFELANS 348
           +RSSALA +    P+ Y AA +    T  EL N+
Sbjct: 381 SRSSALASKATGYPLAYTAAKIALGHTLPELPNA 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,819
Number of Sequences: 5004
Number of extensions: 42158
Number of successful extensions: 110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)