Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0501.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530...    29   3.7  
12_01_0105 - 823302-823770,823902-824006,824149-824540                 27   8.6  
09_04_0435 - 17545879-17546605,17546721-17546782,17547123-175473...    27   8.6  

>11_01_0656 -
           5301048-5301441,5301779-5301976,5302056-5302228,
           5302691-5302935,5303014-5303191,5303578-5303760,
           5303858-5303962,5304621-5304758,5304846-5305802
          Length = 856

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 50  QPMSESS-TQINHNMEEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALP 205
           QP+ ES  +++  N    S    P  V++I+  EK+ +AN  R  ++ +N  P
Sbjct: 232 QPIDESKRSKLGKNSRTLSRLLSPLEVRQILKAEKECQANQLRPEQLIVNGCP 284


>12_01_0105 - 823302-823770,823902-824006,824149-824540
          Length = 321

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 56  MSESSTQINHNMEEQSTTKIPDS--VKKIILMEKDNEANANRKSRIDLNALPTRQY 217
           +SE   Q++ +        + D   V+KI+    D++ +++ K+  D NA P RQ+
Sbjct: 73  ISELQLQLSSDSPHDDDGHLDDKRRVRKIVSSSSDDDDHSSSKAAEDHNAKPLRQH 128


>09_04_0435 -
           17545879-17546605,17546721-17546782,17547123-17547335,
           17547506-17547590,17547904-17548061,17548174-17548294,
           17548765-17548927,17548973-17549097,17550800-17550888,
           17550970-17551636,17552671-17552717,17553506-17553862
          Length = 937

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 137 ILMEKDNEANANRKSRIDLNALPTRQYLDQTVVPILLQGHQH 262
           +++ +++E + +R+ R  LN   + QY+DQ     +L  HQH
Sbjct: 822 VVIPEEHELSYSRQ-RSSLNPSTSSQYVDQAAEVEMLHQHQH 862


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,540,001
Number of Sequences: 37544
Number of extensions: 234897
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)