Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0501.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28681| Best HMM Match : Dpy-30 (HMM E-Value=2.2e-19)                57   1e-08
SB_13568| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.025
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              28   5.0  

>SB_28681| Best HMM Match : Dpy-30 (HMM E-Value=2.2e-19)
          Length = 371

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 28/52 (53%), Positives = 40/52 (76%)
 Frame = +2

Query: 98  QSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLDQTVVPILLQG 253
           Q+   + ++++KII  EK+ EA+   K+++DL +LPTR YLDQTVVPILLQG
Sbjct: 290 QAEIGLTENLQKIIEKEKE-EADKPTKAKVDLQSLPTRAYLDQTVVPILLQG 340



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 19/27 (70%), Positives = 24/27 (88%)
 Frame = +1

Query: 256 SALAKERPPDPINYLAAYLLKNKTTFE 336
           + LAKERPP+ I+YLAAYLLKNK+ +E
Sbjct: 342 ATLAKERPPNAIDYLAAYLLKNKSQYE 368


>SB_13568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
 Frame = +2

Query: 47  LQPMSESSTQI--NHNMEEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTR 211
           L+P+ E+ST    +H M+E+    +PDS +K  L+E +NE+ ++  ++ D    P++
Sbjct: 268 LEPVGEASTSRAGDHEMDEEEARCLPDSQRKTALVESENESWSDGGNKEDTPFDPSK 324


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 62   ESSTQINHNMEEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLDQTVV 235
            + S  +N N  ++ T   P++        K+N+ N+ R+    LN +PT Q L Q ++
Sbjct: 1870 QHSVNVNINTAKKQTVATPET--------KNNDKNSKRQKISILNRIPTMQVLPQKIL 1919


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,167,123
Number of Sequences: 59808
Number of extensions: 287244
Number of successful extensions: 628
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)