Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0501.Seq
         (598 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023602-1|AAY85002.1|   98|Drosophila melanogaster IP06710p pro...    42   6e-04
AE014296-747|AAF47830.1|   98|Drosophila melanogaster CG11591-PA...    42   6e-04
AE014134-1942|AAF53001.1|  134|Drosophila melanogaster CG6444-PA...    40   0.002
AF417921-1|AAL16644.1| 2669|Drosophila melanogaster nucleosome r...    28   8.4  
AE014296-62|AAS64922.1| 2159|Drosophila melanogaster CG32346-PC,...    28   8.4  
AE014296-61|AAN11431.1| 2669|Drosophila melanogaster CG32346-PA,...    28   8.4  
AE014296-60|AAF47361.2| 2649|Drosophila melanogaster CG32346-PB,...    28   8.4  

>BT023602-1|AAY85002.1|   98|Drosophila melanogaster IP06710p
           protein.
          Length = 98

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 27/57 (47%), Positives = 35/57 (61%)
 Frame = +2

Query: 167 ANRKSRIDLNALPTRQYLDQTVVPILLQGHQH*LKNVLRTR*II*QLTYLKTKLLSN 337
           A +K R D +++P RQYLDQTV PILL G    L+ + R R     ++YL T LL N
Sbjct: 35  ACQKPRPDTSSMPVRQYLDQTVAPILLHG----LQALARDR-PSDPISYLATYLLKN 86



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/22 (77%), Positives = 20/22 (90%)
 Frame = +1

Query: 259 ALAKERPPDPINYLAAYLLKNK 324
           ALA++RP DPI+YLA YLLKNK
Sbjct: 66  ALARDRPSDPISYLATYLLKNK 87


>AE014296-747|AAF47830.1|   98|Drosophila melanogaster CG11591-PA
           protein.
          Length = 98

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 27/57 (47%), Positives = 35/57 (61%)
 Frame = +2

Query: 167 ANRKSRIDLNALPTRQYLDQTVVPILLQGHQH*LKNVLRTR*II*QLTYLKTKLLSN 337
           A +K R D +++P RQYLDQTV PILL G    L+ + R R     ++YL T LL N
Sbjct: 35  ACQKPRPDTSSMPVRQYLDQTVAPILLHG----LQALARDR-PSDPISYLATYLLKN 86



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/22 (77%), Positives = 20/22 (90%)
 Frame = +1

Query: 259 ALAKERPPDPINYLAAYLLKNK 324
           ALA++RP DPI+YLA YLLKNK
Sbjct: 66  ALARDRPSDPISYLATYLLKNK 87


>AE014134-1942|AAF53001.1|  134|Drosophila melanogaster CG6444-PA
           protein.
          Length = 134

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +2

Query: 173 RKSRIDLNALPTRQYLDQTVVPILLQGHQ 259
           +K   + N +PTRQYLDQTV P+LL G Q
Sbjct: 67  KKPSSETNNMPTRQYLDQTVAPVLLHGMQ 95



 Score = 36.3 bits (80), Expect = 0.032
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +1

Query: 259 ALAKERPPDPINYLAAYLLKN 321
           ALA+ERP DPI +LA+YLLK+
Sbjct: 96  ALARERPTDPIQFLASYLLKH 116


>AF417921-1|AAL16644.1| 2669|Drosophila melanogaster nucleosome
           remodeling factor largesubunit NURF301 protein.
          Length = 2669

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 89  MEEQSTTKIPDSVKKIILMEKDNEANANR 175
           +EEQ  +KIP  +K +++  ++N AN+ +
Sbjct: 873 VEEQMASKIPSDMKPLLVSSQNNTANSKQ 901


>AE014296-62|AAS64922.1| 2159|Drosophila melanogaster CG32346-PC,
           isoform C protein.
          Length = 2159

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 89  MEEQSTTKIPDSVKKIILMEKDNEANANR 175
           +EEQ  +KIP  +K +++  ++N AN+ +
Sbjct: 873 VEEQMASKIPSDMKPLLVSSQNNTANSKQ 901


>AE014296-61|AAN11431.1| 2669|Drosophila melanogaster CG32346-PA,
           isoform A protein.
          Length = 2669

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 89  MEEQSTTKIPDSVKKIILMEKDNEANANR 175
           +EEQ  +KIP  +K +++  ++N AN+ +
Sbjct: 873 VEEQMASKIPSDMKPLLVSSQNNTANSKQ 901


>AE014296-60|AAF47361.2| 2649|Drosophila melanogaster CG32346-PB,
           isoform B protein.
          Length = 2649

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 89  MEEQSTTKIPDSVKKIILMEKDNEANANR 175
           +EEQ  +KIP  +K +++  ++N AN+ +
Sbjct: 873 VEEQMASKIPSDMKPLLVSSQNNTANSKQ 901


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,396,814
Number of Sequences: 53049
Number of extensions: 420319
Number of successful extensions: 1127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2420893683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)