Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0501.Seq
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78019-3|CAB01452.1| 123|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U21302-1|AAA92286.1| 123|Caenorhabditis elegans dpy-30 protein. 43 2e-04
Z83731-3|CAB06020.2| 248|Caenorhabditis elegans Hypothetical pr... 29 3.3
U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon gu... 29 3.3
U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon gu... 29 3.3
U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon gu... 29 3.3
U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon gu... 29 3.3
AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFO... 29 3.3
AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFOR... 29 3.3
>Z78019-3|CAB01452.1| 123|Caenorhabditis elegans Hypothetical
protein ZK863.6 protein.
Length = 123
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +2
Query: 92 EEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLDQTVVPILLQG 253
E T +P +V L + N+ + + + +PTRQYLD TVVPILLQG
Sbjct: 36 ESNENTTVPSNV----LSANGGQQTGNQSAPRNTSTVPTRQYLDSTVVPILLQG 85
Score = 33.9 bits (74), Expect = 0.088
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1
Query: 259 ALAKERPPDPINYLAAYLLKNKTTFELAN 345
ALAK+RP +PI +LA +LL+ K + N
Sbjct: 88 ALAKDRPENPIEFLANFLLREKDRYNAEN 116
>U21302-1|AAA92286.1| 123|Caenorhabditis elegans dpy-30 protein.
Length = 123
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +2
Query: 92 EEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLDQTVVPILLQG 253
E T +P +V L + N+ + + + +PTRQYLD TVVPILLQG
Sbjct: 36 ESNENTTVPSNV----LSANGGQQTGNQSAPRNTSTVPTRQYLDSTVVPILLQG 85
Score = 33.9 bits (74), Expect = 0.088
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1
Query: 259 ALAKERPPDPINYLAAYLLKNKTTFELAN 345
ALAK+RP +PI +LA +LL+ K + N
Sbjct: 88 ALAKDRPENPIEFLANFLLREKDRYNAEN 116
>Z83731-3|CAB06020.2| 248|Caenorhabditis elegans Hypothetical
protein M04C9.2 protein.
Length = 248
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 232 SXHTAARSSALAKERPPDPINYLAAYLLKNKTTFE 336
S T A +E+ PD + +LAA+ +KN+ FE
Sbjct: 89 SYETVAEKVPELREKYPDEVLHLAAHSVKNRVLFE 123
>U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform a protein.
Length = 1144
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 170 NRKSRIDLNALPTRQYLDQTVVPILLQGHQH 262
N K R PT QY++Q+ PI LQG+QH
Sbjct: 58 NNKRRSLQQMPPTEQYVNQSS-PIALQGNQH 87
>U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform d protein.
Length = 1147
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 170 NRKSRIDLNALPTRQYLDQTVVPILLQGHQH 262
N K R PT QY++Q+ PI LQG+QH
Sbjct: 58 NNKRRSLQQMPPTEQYVNQSS-PIALQGNQH 87
>U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform b protein.
Length = 1328
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 170 NRKSRIDLNALPTRQYLDQTVVPILLQGHQH 262
N K R PT QY++Q+ PI LQG+QH
Sbjct: 242 NNKRRSLQQMPPTEQYVNQSS-PIALQGNQH 271
>U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform c protein.
Length = 1331
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 170 NRKSRIDLNALPTRQYLDQTVVPILLQGHQH 262
N K R PT QY++Q+ PI LQG+QH
Sbjct: 242 NNKRRSLQQMPPTEQYVNQSS-PIALQGNQH 271
>AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFORM
protein.
Length = 1147
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 170 NRKSRIDLNALPTRQYLDQTVVPILLQGHQH 262
N K R PT QY++Q+ PI LQG+QH
Sbjct: 58 NNKRRSLQQMPPTEQYVNQSS-PIALQGNQH 87
>AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFORM
protein.
Length = 1331
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 170 NRKSRIDLNALPTRQYLDQTVVPILLQGHQH 262
N K R PT QY++Q+ PI LQG+QH
Sbjct: 242 NNKRRSLQQMPPTEQYVNQSS-PIALQGNQH 271
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,383,484
Number of Sequences: 27780
Number of extensions: 227746
Number of successful extensions: 590
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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