Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0501.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28770.1 68416.m03591 expressed protein                             28   4.1  
At4g03300.1 68417.m00451 Ulp1 protease family protein contains P...    27   7.2  
At2g25800.1 68415.m03096 expressed protein                             27   7.2  
At2g14770.2 68415.m01669 Ulp1 protease family protein similar to...    27   9.5  
At2g14770.1 68415.m01668 Ulp1 protease family protein similar to...    27   9.5  
At1g34740.1 68414.m04319 Ulp1 protease family protein contains P...    27   9.5  

>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 50   QPMSESSTQINHNMEEQSTTKIP-DSVKKIILMEKDNEANANRKSRID 190
            + M   S +  +  + Q+TT+   D  K  ILM+ D++A+++  S+ D
Sbjct: 1250 ESMESESKEAENQQKSQATTQADSDESKNEILMQADSQADSHSDSQAD 1297



 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 50   QPMSESSTQINHNMEEQSTTKIP-DSVKKIILMEKDNEANANRKSRID 190
            + M   S +  +  + Q+TT+   D  K  ILM+ D++A+++  S+ D
Sbjct: 1361 ESMESESKEAENQQKSQATTQADSDESKNEILMQADSQADSHSDSQAD 1408


>At4g03300.1 68417.m00451 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain; similar to At3g24380, At5g36840,
            At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
            At2g05560, At4g08880, At1g34730, At1g27790 , At1g34740,
            At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
            At4g05280, At1g25886
          Length = 1285

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/53 (24%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = +2

Query: 59   SESSTQINHNMEEQSTTKIPDSVKKIILMEKDNEANANRKSR-IDLNALPTRQ 214
            S+++  +    E++++ K+P  VKK ++ E+D+    + K++ + +  +PT+Q
Sbjct: 950  SDNAAAVEAKEEKKASPKVPKKVKKQLIYEQDDAHPHDFKAKTVLVPDVPTQQ 1002


>At2g25800.1 68415.m03096 expressed protein
          Length = 996

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 223 PDSSXHTAARSSALAKERPPDPINYLAAYL 312
           P  S    +RSS+++ + PP P+  LA  L
Sbjct: 20  PPPSHSATSRSSSMSSDLPPSPLGQLAVQL 49


>At2g14770.2 68415.m01669 Ulp1 protease family protein similar to
           At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
           At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
           At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
           At1g52020, At3g24390,  At4g05280, At1g25886, At4g03300;
           contains Pfam profile PF02902: Ulp1 protease family,
           C-terminal catalytic domain
          Length = 1158

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +2

Query: 59  SESSTQINHNMEEQSTTKIPDSVKKIILMEKDN 157
           S+++  +    E++S+ K+P  VKK ++ E+D+
Sbjct: 858 SDNAAAVEAEEEKKSSPKVPKKVKKQLVYEQDD 890


>At2g14770.1 68415.m01668 Ulp1 protease family protein similar to
           At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
           At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
           At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
           At1g52020, At3g24390,  At4g05280, At1g25886, At4g03300;
           contains Pfam profile PF02902: Ulp1 protease family,
           C-terminal catalytic domain
          Length = 1139

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +2

Query: 59  SESSTQINHNMEEQSTTKIPDSVKKIILMEKDN 157
           S+++  +    E++S+ K+P  VKK ++ E+D+
Sbjct: 839 SDNAAAVEAEEEKKSSPKVPKKVKKQLVYEQDD 871


>At1g34740.1 68414.m04319 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g27780,
           At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
           At1g25886, At4g03300
          Length = 1383

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +2

Query: 59  SESSTQINHNMEEQSTTKIPDSVKKIILMEKDN 157
           S+++  +    E++S+ K+P  VKK ++ E+D+
Sbjct: 810 SDNAAAVEAKEEKKSSPKVPKKVKKQLVYEQDD 842


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,446,643
Number of Sequences: 28952
Number of extensions: 205582
Number of successful extensions: 450
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)