Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0500.Seq
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    25   0.21 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   2.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   7.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   7.8  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 166 KAAAEIVTGYKFGDPRQPLQPVSQEDK 86
           K  AEI   YK+GDP   +Q    E K
Sbjct: 234 KEIAEIAFAYKYGDPIPYIQYTETETK 260


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 165 KQLPKSLPVTNSG--TPDSPCSQSPKKTRMISRPS*KKT 55
           ++L + L  T S   T D   S S  + R+ SRP  +KT
Sbjct: 34  RRLRRPLKTTQSVSVTKDQDVSSSVNRFRLRSRPGHRKT 72


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 264 CKNSTTRQRLKLNRNYH 214
           CK    R++L   RN+H
Sbjct: 587 CKPCRPREQLTWRRNFH 603


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 264 CKNSTTRQRLKLNRNYH 214
           CK    R++L   RN+H
Sbjct: 479 CKPCRPREQLTWRRNFH 495


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,357
Number of Sequences: 336
Number of extensions: 1726
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)