Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0500.Seq
(399 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|... 27 0.81
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 2.5
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 25 3.3
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 25 4.3
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 4.3
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 5.7
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 25 5.7
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha... 25 5.7
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 24 7.6
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 24 7.6
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 24 7.6
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 24 10.0
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 24 10.0
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 24 10.0
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 24 10.0
>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
3|||Manual
Length = 132
Score = 27.5 bits (58), Expect = 0.81
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 241 AIEAQQKLSHLTNKI-IAKGGVIPGLKAAAEIVTGYKFGDPRQPL 110
AI ++L+ L + IA+GGV+P + A T + G P Q L
Sbjct: 88 AIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTSGRTGKPSQEL 132
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 2.5
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -1
Query: 321 FFDVTASVYPELILEXIKSCKNSTTRQRLKLNRNYHILPIKSS-LKAESYQA*KQLPKSL 145
F D Y E+I++ ++SC+N+ KLN +P K S L+ KS+
Sbjct: 237 FLDQRGFRYGEVIMDSVESCQNAIE----KLNN----VPYKGSILEVSIKNKASSSVKSI 288
Query: 144 PVTNSGTPDSPC-SQSPKKTRM 82
P T +G P S++ KT++
Sbjct: 289 PTTPTGESLWPFPSENANKTQI 310
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 3.3
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -1
Query: 315 DVTASVYPELILEXIKSCKNSTTRQRLKLNRNYH---ILPIKSSLKAES 178
D+ +VYP +L S N ++ K+N +YH +L + S+ A +
Sbjct: 220 DIIDAVYPAAVLGAGASQVNKKKKKSKKINDSYHTDAVLALSSNRNAHN 268
>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 273
Score = 25.0 bits (52), Expect = 4.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 70 WSXYHSCLLGRLAAGAVWGP 129
W+ +HS L GAVW P
Sbjct: 109 WAFFHSSLSPTFELGAVWPP 128
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.0 bits (52), Expect = 4.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 39 AEILHPFSSKMVXISFLSSWE 101
A I HP + + +SFLS W+
Sbjct: 1155 AGIYHPLARDLFNVSFLSCWD 1175
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 5.7
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -1
Query: 207 PIKSSLKAESYQA*KQLPKSLPVTNSG-TPDSPCSQSPKKTRMISRPS*KKTGAESPH 37
P+K + S + P S P+TNS +P + CS T + P K T P+
Sbjct: 378 PVKHGVSPPSLAGNQPSPLSSPLTNSNVSPSTICSPDNNVTFVNLAPGEKLTFKIEPN 435
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 24.6 bits (51), Expect = 5.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 196 IAKGGVIPGLKAAAEIVTGYKFGDPRQP 113
+++G + G +A + T +FGDPR P
Sbjct: 382 VSEGSGVLGRQANWDDFTNGRFGDPRSP 409
>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 24.6 bits (51), Expect = 5.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 226 QKLSHLTNKIIAKGGVIPGLKAAAEIVTGYKFGDPRQPL 110
+K S L K +GG + + AAE+ GY F + +Q L
Sbjct: 145 EKCSQLLEK--CRGGPLNMFEKAAELFPGYGFTELKQSL 181
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 24.2 bits (50), Expect = 7.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 140 TGNDFGSCF*AWYDSAFS 193
T NDF F AW+D FS
Sbjct: 242 TRNDFVHAFLAWFDIEFS 259
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 24.2 bits (50), Expect = 7.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 183 PPLAMILLVRCDSF 224
PP AMIL + C SF
Sbjct: 373 PPAAMILFISCTSF 386
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 24.2 bits (50), Expect = 7.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 165 KQLPKSLPVTNSGTPDSPCSQSPKKTR 85
K+ PK PV+NS + + S KKT+
Sbjct: 229 KKKPKKTPVSNSTASQASENASDKKTK 255
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 23.8 bits (49), Expect = 10.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 72 VXISFLSSWETGCRGCLGSPN 134
+ + FL+SW RGC + N
Sbjct: 312 ITVDFLASWAHSVRGCAATFN 332
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 23.8 bits (49), Expect = 10.0
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Frame = -1
Query: 285 ILEXIK-SCKN--STTRQRLKLNRNYHILPIKSSLKAESYQA*KQ-LPKSLPVTNSGTPD 118
I+E IK S +N + + +R+ I S + S + Q LP+S+P T S T D
Sbjct: 319 IIEFIKNSLQNLCESCGHAISCSRSQSIFSYSSQIPDSSGDSTDQELPQSIPATESETSD 378
Query: 117 SPC---SQSPKKTRMI 79
+SP K +++
Sbjct: 379 DSSFSYKRSPCKRKLV 394
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 23.8 bits (49), Expect = 10.0
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 210 LPIKSSLKAESYQ-A*KQLPKSLPVTNSGTPDSPCSQSPKKTRMISRPS 67
L ++++L E + A K+ N+ D P Q+ K T ISR S
Sbjct: 505 LKVRAALVDEMQELATKEFENKFSNANTAKDDEPARQTNKGTTRISRSS 553
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 157 AEIVTGYKFGDPRQPLQPVS 98
A + Y +GD R PL P+S
Sbjct: 307 ARCIKQYFYGDDRMPLSPLS 326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,601,543
Number of Sequences: 5004
Number of extensions: 30045
Number of successful extensions: 85
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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