Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0500.Seq
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 28 3.1
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 28 3.1
06_03_0364 - 19906623-19906698,19909439-19909806 27 7.2
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 27 7.2
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507... 27 7.2
03_01_0053 + 457622-458191,458328-458393,458734-458978,459393-45... 27 7.2
01_06_0815 - 32178886-32178972,32179065-32179209,32179221-321793... 27 7.2
12_02_1140 + 26411424-26411998,26412491-26412761,26412848-26413405 26 9.5
11_03_0067 - 9535565-9536157,9536446-9536757,9536948-9537212,953... 26 9.5
08_01_0151 + 1186678-1187042,1187926-1188043 26 9.5
05_01_0078 - 523366-525196,525622-525675,527135-529341 26 9.5
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -1
Query: 153 KSLPVTNSGTPDSPCSQSPKKTRMISRPS*KKTGAESPHFSSNFRITKIN 4
K +P G CS+SPK+ R ++ + GA S N + +N
Sbjct: 353 KYIPSEKKGKTAESCSRSPKRERRVNTMA--NVGARKMQLSENLLVKTLN 400
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 27.9 bits (59), Expect = 3.1
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = -1
Query: 255 STTRQRLKLNRNYHILPIKSSLKAESYQA*KQLPKSLPVTNSGTPDSPCSQSPKK--TRM 82
S + QR R+ P++ K+ S + + KSLP + S +P + S+SP K TR
Sbjct: 467 SMSPQRRSARRSKSRSPLRE--KSVSMSPRRSMSKSLPRSVSRSPVARRSRSPVKARTRS 524
Query: 81 ISRPS 67
ISR S
Sbjct: 525 ISRSS 529
>06_03_0364 - 19906623-19906698,19909439-19909806
Length = 147
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -1
Query: 150 SLPVTNSGTPDSPCSQSPKKTRMISRPS*KKTGAESP 40
SLP T S PD CSQS +P+ TG + P
Sbjct: 110 SLPYTFS--PDVDCSQSQGHNHAFKQPNNSSTGPQLP 144
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 235 EAQQKLSHLTNKIIAKGGVIPGLKAAAEIVTGYKFGDPRQ 116
EAQ +L L +I+A G I L+ ++TG G RQ
Sbjct: 185 EAQGRLRGLDGEIVAAVGRIRELREVVRVLTGDLVGAARQ 224
>03_05_1021 -
29750155-29750220,29750342-29750428,29750614-29750799,
29750965-29751059,29751179-29751284,29751378-29751452,
29751548-29751679,29751782-29751961,29752371-29752567,
29752651-29752906
Length = 459
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 133 FGDPRQPLQPVSQEDKNDIXTILEENG 53
FG ++ L+ +SQE +D+ L+ENG
Sbjct: 70 FGHKKETLELMSQEYTSDVIKTLKENG 96
>03_01_0053 +
457622-458191,458328-458393,458734-458978,459393-459861
Length = 449
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 68 DGLDIILVFLGDWLQGLSGVPEFVTGNDFGSCF 166
D +D++ + W + FV +DFG+CF
Sbjct: 155 DAVDLVRAQMPYWNRSAGADHVFVASHDFGACF 187
>01_06_0815 -
32178886-32178972,32179065-32179209,32179221-32179386,
32179606-32179668,32179810-32179876,32180119-32180196,
32180315-32180447,32180759-32180829,32180956-32181017,
32181391-32181433,32181609-32181706,32182575-32182811,
32182880-32182955
Length = 441
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 31 TKMRRFCTRFLLRWSXYHSCLLGRLA 108
TK R FCT L +W SC LA
Sbjct: 168 TKQRNFCTYSLNQWMLLKSCYHSMLA 193
>12_02_1140 + 26411424-26411998,26412491-26412761,26412848-26413405
Length = 467
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 250 DTAAIEAQQKLSHLTNKIIAKGGVIPGLKAAAEIVTG 140
D A +A + L HL + A GG G KA E++ G
Sbjct: 112 DRAFGDAVEMLRHLVAGVAAGGGADDGGKAFDEVIVG 148
>11_03_0067 -
9535565-9536157,9536446-9536757,9536948-9537212,
9537810-9538048,9538400-9538568,9539216-9539410,
9539649-9539766,9542140-9542315
Length = 688
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 205 W*DVIVSVELQSLPCRRVFTRFYXFQDQ 288
W D++ ELQ C V + Y F++Q
Sbjct: 286 WKDLVEEFELQGCECEPVLSTRYAFEEQ 313
>08_01_0151 + 1186678-1187042,1187926-1188043
Length = 160
Score = 26.2 bits (55), Expect = 9.5
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 139 YKFGDPRQPLQPVSQEDKND 80
Y FGD ++P + + ++DK+D
Sbjct: 128 YPFGDEQEPKEGIMEDDKHD 147
>05_01_0078 - 523366-525196,525622-525675,527135-529341
Length = 1363
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = -1
Query: 348 SALQAGFXTFFDVTASVY-PELILEXIKSCKNSTTRQRLKLNRNYH 214
+ALQA F+D+ VY P L + S T NYH
Sbjct: 117 AALQAAEKPFYDILGQVYPPSLNRLALHSANEPDTPDESSSRNNYH 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,337,821
Number of Sequences: 37544
Number of extensions: 199504
Number of successful extensions: 575
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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