Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0500.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.4  
SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)           28   3.2  
SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)                        27   5.6  
SB_46645| Best HMM Match : Exo_endo_phos (HMM E-Value=0.044)           27   5.6  
SB_4374| Best HMM Match : GCS (HMM E-Value=6.2)                        27   5.6  
SB_47219| Best HMM Match : DUF414 (HMM E-Value=1.7)                    27   7.4  

>SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1513

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -1

Query: 135 NSGTPDSPCSQSPKKTRMISRPS*KKTGAESPHFSSNFRITKINS 1
           N G P +P + S  K  +   PS K T     H S  +  T++ S
Sbjct: 249 NGGVPGAPQNTSSPKIALQKTPSTKVTPPSPTHISPKYYATQVTS 293


>SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)
          Length = 721

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 201 KSSLKAESYQA*KQLPKSL-PVTNSGTPDSPCSQSPKKTRMISRP 70
           +S+ K  + +A  Q P +  PV+ S TP  P S  PK T + S P
Sbjct: 559 ESAAKDTAPEAPAQPPTAADPVSRSTTPTRPTSPPPKSTSISSLP 603


>SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)
          Length = 780

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 171 PGMTPPLAMILLVRCDSFC*ASIAAVSSSFYTILXFPR 284
           P +TP L   L   CDS C   I  + +  +T   F R
Sbjct: 5   PPVTPALLQALASTCDSSCTEDIVTLCAFRFTFFLFAR 42


>SB_46645| Best HMM Match : Exo_endo_phos (HMM E-Value=0.044)
          Length = 464

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 165 KQLPKSLPVTN-SGTPDSPCSQSPKKTRMISRPS*KKTGAESPHFSSNFRITKI 7
           K+ PK     N +   DSP S  P+ TRMI         +  P     F ITK+
Sbjct: 157 KRKPKKKETANHTSVVDSPPSDRPRNTRMIPVTLIANFRSLLPKMDELFSITKV 210


>SB_4374| Best HMM Match : GCS (HMM E-Value=6.2)
          Length = 326

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 165 KQLPKSLPVTN-SGTPDSPCSQSPKKTRMISRPS*KKTGAESPHFSSNFRITKI 7
           K+ PK     N +   DSP S  P+ TRMI         +  P     F ITK+
Sbjct: 157 KRKPKKKETANHTSVVDSPPSDRPRNTRMIPVTLIANFRSLLPKMDELFSITKV 210


>SB_47219| Best HMM Match : DUF414 (HMM E-Value=1.7)
          Length = 704

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 297 YPELILEXIKSCKNSTTRQRLKLNRNYHILPIKSSLKAES 178
           +PE   E I   + STT ++LK    Y ++  KS L A+S
Sbjct: 294 FPEDEQERIAFEQRSTTPRKLKKQNPYSVMRSKSDLGADS 333


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,944,497
Number of Sequences: 59808
Number of extensions: 229808
Number of successful extensions: 597
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)