Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0500.Seq
         (399 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            29   0.083
EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton anti...    23   5.4  
Y09951-1|CAA71082.1|  107|Anopheles gambiae histone H2a protein.       22   9.5  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 28.7 bits (61), Expect = 0.083
 Identities = 20/82 (24%), Positives = 35/82 (42%)
 Frame = -1

Query: 300 VYPELILEXIKSCKNSTTRQRLKLNRNYHILPIKSSLKAESYQA*KQLPKSLPVTNSGTP 121
           + PEL ++  KSC  S    R +       LP++SS +          P   P+ +    
Sbjct: 337 ITPELWMKNCKSCSISPVSDRSESVSPVPSLPVRSSPEPSPVLLRSPTPAKKPLISVAPA 396

Query: 120 DSPCSQSPKKTRMISRPS*KKT 55
               S+S + + + +RPS K +
Sbjct: 397 SKLLSKSLQPSTLPTRPSPKSS 418


>EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton
           antiporter protein.
          Length = 647

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 88  CLLGRLAAGAVWG 126
           C++G L  G VWG
Sbjct: 367 CIIGGLGFGVVWG 379


>Y09951-1|CAA71082.1|  107|Anopheles gambiae histone H2a protein.
          Length = 107

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 241 AIEAQQKLSHLTNKI-IAKGGVIPGLKA 161
           AI   ++ + L  ++ IA+GGV+P ++A
Sbjct: 71  AIRNDEEENKLLRRVTIAQGGVLPNIQA 98


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 390,558
Number of Sequences: 2352
Number of extensions: 6858
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 31639662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)