Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0500.Seq
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97014-3|AAB52427.3|  856|Caenorhabditis elegans Hypothetical pr...    31   0.23 
AF068714-1|AAC17808.1|  254|Caenorhabditis elegans Hypothetical ...    29   1.2  
Z73970-3|CAA98242.2|  773|Caenorhabditis elegans Hypothetical pr...    27   3.7  
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    27   3.7  
AF039041-6|AAB94190.1|  389|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z73102-12|CAA97406.1|  430|Caenorhabditis elegans Hypothetical p...    27   6.5  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    26   8.7  

>U97014-3|AAB52427.3|  856|Caenorhabditis elegans Hypothetical
           protein T05E8.3 protein.
          Length = 856

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
 Frame = -1

Query: 288 LILEXIKSCKNSTTRQRLKLNRNYHILP--IKSSLKAESYQA*KQLPKSLPVTNSGTPDS 115
           ++L+  K   N+  ++   L+  + I    +K   K E      Q PK LP T   TP +
Sbjct: 68  MLLKKKKKQMNNFQKEEELLSSTFRITNGILKKEKKIEVTTISTQTPKKLPKTPISTPSN 127

Query: 114 PCSQSPKKTRMISRPS*KKTGAESPHFSSNF 22
             + +P  TR  S      +    PHF +N+
Sbjct: 128 SKNATPMSTRKHS-----SSQQSPPHFEANY 153


>AF068714-1|AAC17808.1|  254|Caenorhabditis elegans Hypothetical
           protein B0348.5 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 21/61 (34%), Positives = 32/61 (52%)
 Frame = -1

Query: 195 SLKAESYQA*KQLPKSLPVTNSGTPDSPCSQSPKKTRMISRPS*KKTGAESPHFSSNFRI 16
           S   +SYQ      K+   T +G+P +  ++ P+K R   +P+ KKT A +P  SSN   
Sbjct: 185 SRDVDSYQH-DDAAKANKKTTTGSPSTTSTRKPRKAR---KPT-KKTVAAAPSSSSNTST 239

Query: 15  T 13
           T
Sbjct: 240 T 240


>Z73970-3|CAA98242.2|  773|Caenorhabditis elegans Hypothetical
           protein C29A12.3a protein.
          Length = 773

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -1

Query: 207 PIKSSLKAESYQA*--KQLPKSLPVTNSGTPDSPCSQSPKKTRMISRPS*KKTGAESPHF 34
           P+K  +K E+ ++   K+  K  PV +S     P ++SP K+  I + + KK G  +  F
Sbjct: 663 PVKEEIKKETPKSVSPKKFEKKPPVKSS-----PVNKSPVKSSPIKKEAEKKKGPVASIF 717

Query: 33  SSN 25
           SS+
Sbjct: 718 SSS 720


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
 Frame = +3

Query: 141 PVTISAAAFKPGMTPPLAMILLVRCDSF-C*ASIAAVSSSFYTILXFPRSVRGKRXQSRQ 317
           P TI A    P + P    ILL+  D F   AS+   +S  Y     P    G    S  
Sbjct: 223 PATIDAGYDIPNLAPNFDFILLMSYDFFGAWASLVGFNSPLYATTELPAEWNGWNVDSSA 282

Query: 318 R 320
           R
Sbjct: 283 R 283


>AF039041-6|AAB94190.1|  389|Caenorhabditis elegans Hypothetical
           protein W03F8.3 protein.
          Length = 389

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 244 AAIEAQQKLSHLTNKIIAKGGVIPGLKAAAEIVTGYKFGDPR 119
           AAI  Q+++  +  KI++K  +  G KA AE +  Y F   R
Sbjct: 299 AAILMQKQVDAMLEKIVSKRKLQVGSKARAEKIRTYNFQHDR 340


>Z73102-12|CAA97406.1|  430|Caenorhabditis elegans Hypothetical
           protein B0035.11 protein.
          Length = 430

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 150 SLPVTNSGTPDSPCSQSPKKTRMISRPS 67
           S P +   +PDSP  Q P K R I   S
Sbjct: 20  STPSSRGSSPDSPKKQEPSKKRAILNES 47


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 25/69 (36%), Positives = 36/69 (52%)
 Frame = -2

Query: 260 KTRRHGSD*SSTETITSYQ*NHR*RRSHTRLKSSCRNRYRLQIRGPQTAPAASLPRRQE* 81
           K++R  S  S + + +S + + R R S   +K+S   R R  IR    AP+AS PRR+  
Sbjct: 42  KSKRDSSRSSRSRSRSSSESDSRSRSSSPVVKNSPPKRKREPIR----APSASPPRRRR- 96

Query: 80  YXDHLRRKR 54
             D   RKR
Sbjct: 97  --DDSPRKR 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,846,192
Number of Sequences: 27780
Number of extensions: 167162
Number of successful extensions: 522
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)