Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0500.Seq
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          24   0.74 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   3.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   9.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   9.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   9.1  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 13  RDSKIRTKMRRFCTRFLLRWSXY 81
           R++KI   +    T FLL WS Y
Sbjct: 105 REAKITKMVALMITAFLLAWSPY 127


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -1

Query: 243 QRLKLNRNYHILPIKSSLKAESYQA*KQLPKSLPVTNSGTPDSP 112
           Q+L++ ++ ++L     L+  +  +  Q  + LP+  S T D P
Sbjct: 188 QQLQITQSQYLLQQGLGLQGHNPSSGLQPGEGLPMWKSDTSDGP 231


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 330 ILLEVPMIWKGNPICICSDLL 392
           I   + + W+GN  C+  DL+
Sbjct: 244 ITCPIKVSWRGNYSCLKVDLI 264


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 330 ILLEVPMIWKGNPICICSDLL 392
           I   + + W+GN  C+  DL+
Sbjct: 295 ITCPIKVSWRGNYSCLKVDLI 315


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 330 ILLEVPMIWKGNPICICSDLL 392
           I   + + W+GN  C+  DL+
Sbjct: 244 ITCPIKVSWRGNYSCLKVDLI 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,848
Number of Sequences: 438
Number of extensions: 2151
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)