Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0500.Seq
(399 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46380.1 68418.m05708 hypothetical protein 28 2.6
At5g20980.1 68418.m02494 5-methyltetrahydropteroyltriglutamate--... 27 4.6
At1g70080.1 68414.m08063 terpene synthase/cyclase family protein... 27 4.6
At1g48090.2 68414.m05363 C2 domain-containing protein contains P... 27 4.6
At1g48090.1 68414.m05362 C2 domain-containing protein contains P... 27 4.6
At5g61370.1 68418.m07700 pentatricopeptide (PPR) repeat-containi... 26 8.0
At4g01260.1 68417.m00166 hypothetical protein low similarity to ... 26 8.0
At3g44580.1 68416.m04791 hypothetical protein predicted protein,... 26 8.0
At3g31540.1 68416.m04025 hypothetical protein 26 8.0
>At5g46380.1 68418.m05708 hypothetical protein
Length = 607
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 222 NYHILPIKSSLKAESYQA*KQLPKSLPVTNSGTPDSPCS 106
N+H+ P + ++ +E Y P SLP N T D P S
Sbjct: 435 NHHLYP-QPNVPSEHYGNMMNYPYSLPTQNDNTYDMPAS 472
>At5g20980.1 68418.m02494
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase, putative / vitamin-B12-independent
methionine synthase, putative / cobalamin-independent
methionine synthase, putative strong similarity to
SP|O50008
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
methionine synthase isozyme) (Cobalamin-independent
methionine synthase isozyme) {Arabidopsis thaliana};
contains Pfam profile PF01717: Methionine synthase,
vitamin-B12 independent
Length = 812
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 156 PKSLPVTNSGTPDSPCSQSPKKTR 85
P SLP +S TP PC+ + ++ R
Sbjct: 19 PPSLPPPSSATPSLPCATASRRPR 42
>At1g70080.1 68414.m08063 terpene synthase/cyclase family protein
similar to (+)-delta-cadinene synthase [Gossypium
hirsutum][GI:8389329], sesquiterpene synthases
[GI:11934937][Lycopersicon hirsutum],
[GI:11934933][Lycopersicon esculentum]; contains Pfam
profile: PF01397: Terpene synthase family
Length = 611
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -1
Query: 240 RLKLNRNYHILPIKSSLKAESYQA*KQLPKSLPVTNSGTPDSPCSQS 100
RL L+ +YH +KSSL +Q+ K+L TN T D+ ++S
Sbjct: 22 RLNLSSSYHYPLLKSSLSFSRFQSPKKLCLVRATTNP-TDDNSTTRS 67
>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 3427
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 315 DVTASVYPELILEXIKSCKNSTTRQRLKLNRNYHILPIKSSLK 187
++T + E+ + IK + + LNR+Y + PI SLK
Sbjct: 282 NITPEEWIEMFEDGIKEQTEHKIKSKWALNRHYLLSPINGSLK 324
>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 4144
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 315 DVTASVYPELILEXIKSCKNSTTRQRLKLNRNYHILPIKSSLK 187
++T + E+ + IK + + LNR+Y + PI SLK
Sbjct: 282 NITPEEWIEMFEDGIKEQTEHKIKSKWALNRHYLLSPINGSLK 324
>At5g61370.1 68418.m07700 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 487
Score = 26.2 bits (55), Expect = 8.0
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 312 VTASVYPELILEXIKSCKNSTTRQRLKLNRNYHILPIKSSLKAESY 175
V+ S L+ + I+SCKN T+ +RL ++ + SSL + +
Sbjct: 61 VSVSPSSNLVTQVIESCKNETSPRRLLRFFSWSCKSLGSSLHDKEF 106
>At4g01260.1 68417.m00166 hypothetical protein low similarity to
storekeeper protein [Solanum tuberosum] GI:14268476;
contains Pfam profile PF04504: Protein of unknown
function, DUF573
Length = 325
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 135 NSGTPDSPCSQSPKKTRMISRPS*KKT 55
+ + DSP +S KK ++S+PS KT
Sbjct: 35 SDSSADSPVKESSKKPVVVSKPSGSKT 61
>At3g44580.1 68416.m04791 hypothetical protein predicted protein,
Arabidopsis thaliana
Length = 163
Score = 26.2 bits (55), Expect = 8.0
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = -1
Query: 321 FFDVTASVYPELILEXIKSCK----NSTTRQRLKLN 226
++++ VYP+L+ E I +C+ N R+R+K N
Sbjct: 83 YWEMDEDVYPKLVKEFIATCRLTYANPENRKRVKEN 118
>At3g31540.1 68416.m04025 hypothetical protein
Length = 699
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 399 NLXEDQNIYISDYLSISSALQAGFXTFFDVTASVYPELILE 277
+L ED + + L + + +AG + DVT YPE+ +E
Sbjct: 75 DLSEDSELSLVRKLRVLAVDEAGSSNWQDVTEPFYPEVKIE 115
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,373,101
Number of Sequences: 28952
Number of extensions: 159851
Number of successful extensions: 402
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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