Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0499.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   3.5  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   3.5  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   8.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   8.1  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 367 PKSCTKXIACGHNLIGLVG 423
           P +CT     G+  +GLVG
Sbjct: 141 PAACTPDSRVGYGSVGLVG 159


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 141 ENFHFSGSTDTLKENYSMMRK 79
           EN H    TDTLK+    ++K
Sbjct: 173 ENCHLKFVTDTLKKELEKLQK 193


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 138 NFHFSGSTDTLKENYSMMRKPSNANYQLN*FQN*TSDYT 22
           +FH   S+++ +   +   + SN++   N   N  +DYT
Sbjct: 479 SFHQFYSSESSQNQVAPTGENSNSSSDFNFLSNLANDYT 517


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 138 NFHFSGSTDTLKENYSMMRKPSNANYQLN*FQN*TSDYT 22
           +FH   S+++ +   +   + SN++   N   N  +DYT
Sbjct: 427 SFHQFYSSESSQNQVAPTGENSNSSSDFNFLSNLANDYT 465


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,789
Number of Sequences: 336
Number of extensions: 1969
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)