Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0499.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr ...    76   3e-15
SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar...    25   4.8  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   8.4  
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    25   8.4  

>SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score = 75.8 bits (178), Expect = 3e-15
 Identities = 35/70 (50%), Positives = 48/70 (68%)
 Frame = +3

Query: 255 GKLRYANNSNYKNDTMIRKEAYVHPCVMDELKRIIIDSEIMHEXXRLWPQPDRVGWXELE 434
           G  RYANNSNY+ND++IRKE +V   V+ E++RI+ DSEI+ E    WP  ++ G  ELE
Sbjct: 29  GLARYANNSNYRNDSLIRKEMFVSELVLKEVQRIVDDSEIIKESDESWPPENKDGKQELE 88

Query: 435 IVIGEEHIXF 464
           I +  +HI F
Sbjct: 89  IRMNGKHIMF 98



 Score = 52.0 bits (119), Expect = 5e-08
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = +1

Query: 175 TDFYIRYYVGHXGKFGHEFLEFEFRPEG 258
           +DFY+RYY GH G+FGHEFLEF++  +G
Sbjct: 2   SDFYVRYYSGHHGRFGHEFLEFDYHSDG 29


>SPBP8B7.08c |||leucine carboxyl methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 175 TDFYIRYYVGHXGKFGHEFLEFEFRPEGNCVMPI 276
           TD  +  Y+   G    +F+EF+F P  NC+  I
Sbjct: 78  TDTRVFRYISEYGPENLKFIEFDFYP--NCIRKI 109


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 207 VSNIISYVKIRRHFAQSFXFILENF 133
           V+N+++Y  +R HF Q+    L  F
Sbjct: 494 VANVVAYAYVRPHFPQTSMNTLNTF 518


>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 258 KLRYANNSNYKNDTMIRKEAYVHPCVMD 341
           K+ YA  S Y++  +   E Y H  V+D
Sbjct: 34  KVLYAGKSKYQDVLVFESETYGHVLVLD 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,537
Number of Sequences: 5004
Number of extensions: 35015
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)