Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0499.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1060 + 10958632-10958871,10959006-10959272                      105   2e-23
03_06_0137 - 31937541-31939892                                         30   1.2  
06_03_0249 + 18700299-18700769,18700848-18701309,18701391-187022...    27   6.3  

>12_01_1060 + 10958632-10958871,10959006-10959272
          Length = 168

 Score =  105 bits (252), Expect = 2e-23
 Identities = 49/70 (70%), Positives = 55/70 (78%)
 Frame = +3

Query: 255 GKLRYANNSNYKNDTMIRKEAYVHPCVMDELKRIIIDSEIMHEXXRLWPQPDRVGWXELE 434
           GKLRYANNSNYKNDTMIRKE +V P V+ E +RII +SEIM E    WP+PDRVG  ELE
Sbjct: 42  GKLRYANNSNYKNDTMIRKEVFVSPSVLREARRIIQESEIMKEDDNNWPEPDRVGRQELE 101

Query: 435 IVIGEEHIXF 464
           IV+G EHI F
Sbjct: 102 IVMGNEHISF 111



 Score = 60.9 bits (141), Expect = 6e-10
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = +1

Query: 178 DFYIRYYVGHXGKFGHEFLEFEFRPEG 258
           +FY+RYYVGH GKFGHEFLEFEFRP+G
Sbjct: 16  EFYLRYYVGHKGKFGHEFLEFEFRPDG 42


>03_06_0137 - 31937541-31939892
          Length = 783

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 288 KNDTMIRKEAYVHPCVMDELKRIIIDSEIMHEXXRLWPQPDRVGWXEL 431
           KN+  I  E   + C++D L R  + SE      R+  +PD + W  L
Sbjct: 539 KNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSL 586


>06_03_0249 +
           18700299-18700769,18700848-18701309,18701391-18702223,
           18702306-18702476,18702556-18702856
          Length = 745

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 112 YTKRKLLNDEK--TLKRKLSVKLISELNFRLHSRV 14
           Y KRK+  +EK   LK +L V+ I EL   +++RV
Sbjct: 215 YRKRKVSKEEKDARLKAELKVEAIQELEASMNARV 249


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,052,753
Number of Sequences: 37544
Number of extensions: 194561
Number of successful extensions: 341
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)